Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5764

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
2,790,479	+				+1.6
2,790,479	+				-0.7
2,790,479	+				+0.2
2,790,479	+				-0.4
2,790,480	-				+0.4
2,790,485	+				-2.3
2,790,485	+				-0.9
2,790,486	-				-0.0
2,790,486	-				-0.6
2,790,566	+				-1.1
2,790,567	-				-1.0
2,790,567	-				-0.5
2,790,567	-				+0.4
2,790,567	-				+1.3
2,791,598	+		GFF5764	0.70	-1.3
2,791,598	+		GFF5764	0.70	+0.0
2,791,598	+		GFF5764	0.70	-1.0
2,791,599	-		GFF5764	0.71	-0.3
2,791,599	-		GFF5764	0.71	+0.1
2,791,994	+				-0.2
2,791,994	+				-0.9
2,791,994	+				-1.0
2,791,995	-				-0.7
2,792,024	+		GFF5765	0.11	-1.3
2,792,024	+		GFF5765	0.11	-0.4
2,792,025	-		GFF5765	0.11	-0.0
2,792,025	-		GFF5765	0.11	-0.5
2,792,025	-		GFF5765	0.11	-0.4
2,792,025	-		GFF5765	0.11	-1.4
2,792,045	+		GFF5765	0.13	+0.1
2,792,147	+		GFF5765	0.20	+1.1
2,792,148	-		GFF5765	0.20	+1.0
2,792,148	-		GFF5765	0.20	-0.5
2,792,321	+		GFF5765	0.33	-0.1
2,792,322	-		GFF5765	0.33	-2.8
2,792,322	-		GFF5765	0.33	-0.0
2,792,322	-		GFF5765	0.33	-0.2
2,792,465	+		GFF5765	0.43	+1.2
2,792,465	+		GFF5765	0.43	-0.4
2,792,466	-		GFF5765	0.44	+0.6
2,792,466	-		GFF5765	0.44	+0.1