Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5553

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
2,558,902	-				-0.2
2,558,903	+				+0.7
2,558,903	+				-0.6
2,558,904	-				+0.2
2,558,941	+				+0.3
2,558,941	+				-1.2
2,558,941	+				-0.2
2,558,941	+				-0.8
2,558,942	-				+0.7
2,558,942	-				-0.1
2,558,942	-				-0.1
2,558,942	-				+0.6
2,558,942	-				+0.5
2,558,942	-				-1.5
2,558,945	+				+0.2
2,558,945	+				-0.8
2,558,945	+				+0.7
2,558,945	+				-0.6
2,558,946	-				-0.2
2,558,946	-				-0.2
2,558,946	-				-0.1
2,558,946	-				+1.0
2,558,949	+				+0.3
2,558,949	+				-0.1
2,558,949	+				+0.9
2,558,949	+				+0.8
2,558,949	+				+0.8
2,558,950	-				+0.1
2,558,997	+				-0.3
2,559,013	+				-1.0
2,559,014	-				-0.8
2,559,360	+		GFF5551	0.46	-0.6
2,559,672	+		GFF5551	0.86	-1.9
2,559,672	+		GFF5551	0.86	-0.2
2,559,672	+		GFF5551	0.86	-0.5
2,559,672	+		GFF5551	0.86	+0.0
2,559,672	+		GFF5551	0.86	+0.1
2,559,672	+		GFF5551	0.86	+0.4
2,559,672	+		GFF5551	0.86	+1.1
2,559,672	+		GFF5551	0.86	+1.0
2,559,672	+		GFF5551	0.86	-0.3
2,559,672	+		GFF5551	0.86	+0.0
2,559,672	+		GFF5551	0.86	-0.5
2,559,673	-		GFF5551	0.86	+0.7
2,559,673	-		GFF5551	0.86	-0.8
2,559,673	-		GFF5551	0.86	-0.1
2,559,673	-		GFF5551	0.86	-0.0
2,559,674	+		GFF5551	0.86	-1.2
2,559,674	+		GFF5551	0.86	-1.8
2,559,674	+		GFF5551	0.86	-0.1
2,559,674	+		GFF5551	0.86	+0.2
2,559,675	-		GFF5551	0.86	+0.6
2,559,675	-		GFF5551	0.86	-1.0
2,559,675	-		GFF5551	0.86	+1.0
2,559,675	-		GFF5551	0.86	+0.1
2,559,675	-		GFF5551	0.86	+0.9
2,559,823	+		GFF5552	0.39	+0.1
2,559,823	+		GFF5552	0.39	+0.7
2,559,824	-		GFF5552	0.39	-0.2
2,559,900	+				-0.5
2,559,900	+				+0.3
2,559,900	+				+0.7
2,559,901	-				-0.1
2,559,901	-				+0.6
2,559,901	-				+0.6
2,559,901	-				-0.1
2,559,901	-				+1.2
2,559,901	-				-0.7
2,559,937	+				-0.3
2,560,021	+				-1.1
2,560,022	-				-1.8
2,560,022	-				+0.3
2,560,084	+				+0.2
2,560,084	+				-1.4
2,560,084	+				-0.4
2,560,084	+				+0.6
2,560,085	-				-0.1
2,560,085	-				+0.8
2,560,163	-				+1.6
2,560,163	-				+0.4
2,560,216	+				-0.1
2,560,216	+				+0.2
2,560,217	-				+0.1
2,560,217	-				-0.3
2,560,288	+		GFF5553	0.11	-0.1
2,560,288	+		GFF5553	0.11	+0.3
2,560,288	+		GFF5553	0.11	-1.4
2,560,288	+		GFF5553	0.11	+0.8
2,560,289	-		GFF5553	0.11	-1.8
2,560,289	-		GFF5553	0.11	-0.3
2,560,289	-		GFF5553	0.11	+1.1
2,560,289	-		GFF5553	0.11	-0.2
2,560,510	+		GFF5553	0.17	-0.2
2,560,511	-		GFF5553	0.17	+0.5
2,560,570	+		GFF5553	0.19	+0.2
2,560,601	+		GFF5553	0.20	-0.3
2,560,601	+		GFF5553	0.20	-0.0
2,560,601	+		GFF5553	0.20	-0.0
2,560,774	+		GFF5553	0.25	-1.0
2,560,801	+		GFF5553	0.26	+0.4
2,560,802	-		GFF5553	0.26	+0.5
2,560,903	+		GFF5553	0.29	+0.7
2,560,903	+		GFF5553	0.29	+0.4
2,560,903	+		GFF5553	0.29	+0.8
2,560,904	-		GFF5553	0.29	+0.4
2,561,161	+		GFF5553	0.36	+0.2
2,561,162	-		GFF5553	0.36	+0.4
2,561,227	+		GFF5553	0.38	+0.5
2,561,227	+		GFF5553	0.38	-0.1
2,561,227	+		GFF5553	0.38	-0.0
2,561,227	+		GFF5553	0.38	+0.1
2,561,228	-		GFF5553	0.38	-0.8
2,561,257	+		GFF5553	0.39	-0.6
2,561,257	+		GFF5553	0.39	-0.3
2,561,258	-		GFF5553	0.39	+0.3
2,561,258	-		GFF5553	0.39	+0.1
2,561,258	-		GFF5553	0.39	-0.4
2,561,260	+		GFF5553	0.39	+0.2
2,561,260	+		GFF5553	0.39	+0.1
2,561,260	+		GFF5553	0.39	-2.4
2,561,260	+		GFF5553	0.39	-1.2
2,561,260	+		GFF5553	0.39	-0.9
2,561,261	-		GFF5553	0.39	+0.2
2,561,261	-		GFF5553	0.39	-0.6
2,561,261	-		GFF5553	0.39	+1.9
2,561,261	-		GFF5553	0.39	-0.6
2,561,261	-		GFF5553	0.39	+0.8
2,561,383	+		GFF5553	0.42	+1.3
2,561,383	+		GFF5553	0.42	+1.1
2,561,384	-		GFF5553	0.42	-0.5
2,561,384	-		GFF5553	0.42	-0.2
2,561,447	-		GFF5553	0.44	+0.2
2,561,509	+		GFF5553	0.46	-0.4
2,561,510	-		GFF5553	0.46	+1.2
2,561,584	+		GFF5553	0.48	-1.0
2,561,591	-		GFF5553	0.48	+0.2
2,561,938	+		GFF5553	0.58	+0.7
2,561,938	+		GFF5553	0.58	+0.8
2,561,938	+		GFF5553	0.58	+0.5
2,561,938	+		GFF5553	0.58	-0.2
2,561,974	+		GFF5553	0.59	-0.4
2,562,166	+		GFF5553	0.65	+0.1
2,562,167	-		GFF5553	0.65	+1.3
2,562,352	+		GFF5553	0.70	-0.0
2,562,427	+		GFF5553	0.72	-1.2
2,562,427	+		GFF5553	0.72	-0.0
2,562,475	+		GFF5553	0.73	+0.1
2,562,580	+		GFF5553	0.76	+0.2
2,562,581	-		GFF5553	0.76	+0.3
2,562,827	-		GFF5553	0.83	+0.6
2,562,982	+		GFF5553	0.88	+1.3
2,563,120	+				-1.0
2,563,121	-				-0.2
2,563,121	-				-1.1
2,563,121	-				+0.2
2,563,232	-				+0.2
2,563,261	+				-0.0
2,563,261	+				+0.3
2,563,261	+				+0.1
2,563,262	-				-0.6
2,563,286	-				-0.0
2,563,286	-				+0.5
2,563,497	+				-0.2
2,563,497	+				-1.4
2,563,498	-				-0.5
2,563,502	+				-0.4
2,563,502	+				-0.3
2,563,502	+				+0.6
2,563,503	-				-0.8
2,563,503	-				-0.6
2,563,761	+				-0.2
2,563,762	-				-0.2
2,563,762	-				+1.6
2,563,762	-				+0.2
2,563,762	-				-0.3
2,563,762	-				+0.1
2,563,977	+		GFF5554	0.18	-0.3
2,564,112	+		GFF5554	0.23	-0.4
2,564,277	+		GFF5554	0.30	+0.2
2,564,277	+		GFF5554	0.30	-0.8
2,564,277	+		GFF5554	0.30	+0.1
2,564,290	-		GFF5554	0.30	-0.1
2,564,304	+		GFF5554	0.31	+0.4