Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5530

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
2,534,081	+				-0.2
2,534,081	+				-0.3
2,534,082	-				+0.3
2,534,250	+		GFF5529	0.16	-0.9
2,534,250	+		GFF5529	0.16	-1.6
2,534,250	+		GFF5529	0.16	-2.0
2,534,250	+		GFF5529	0.16	-0.0
2,534,251	-		GFF5529	0.16	+0.2
2,534,400	+		GFF5529	0.32	-0.6
2,534,457	+		GFF5529	0.39	-0.9
2,534,473	-		GFF5529	0.40	+0.1
2,534,473	-		GFF5529	0.40	-1.6
2,534,589	+		GFF5529	0.53	-0.4
2,535,042	+				-0.4
2,535,042	+				-0.1
2,535,070	+				+1.2
2,535,070	+				-1.2
2,535,070	+				-0.3
2,535,070	+				-0.3
2,535,071	-				-0.3
2,535,075	+				+0.5
2,535,130	-				-0.1
2,535,130	-				-0.2
2,535,130	-				+0.0
2,535,335	-		GFF5530	0.28	-0.1
2,535,550	+		GFF5530	0.51	+0.9
2,535,551	-		GFF5530	0.51	-2.2
2,535,551	-		GFF5530	0.51	-0.6
2,535,551	-		GFF5530	0.51	+0.1
2,535,754	+		GFF5530	0.73	+0.1
2,535,754	+		GFF5530	0.73	-0.8
2,535,860	-		GFF5530	0.84	+1.0
2,535,877	+		GFF5530	0.86	+0.8
2,536,098	+				-0.3
2,536,170	+		GFF5531	0.17	-0.3
2,536,170	+		GFF5531	0.17	+0.7
2,536,188	+		GFF5531	0.19	+0.6
2,536,189	-		GFF5531	0.19	-1.0
2,536,894	-				+0.8