Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4891

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,904,141	+		GFF4890	0.78	-2.9
1,904,294	+		GFF4890	0.84	-2.5
1,904,295	-		GFF4890	0.84	+0.3
1,904,336	+		GFF4890	0.86	-1.2
1,904,336	+		GFF4890	0.86	-2.0
1,904,337	-		GFF4890	0.86	-1.4
1,904,337	-		GFF4890	0.86	-1.6
1,904,510	+				-1.2
1,904,510	+				-0.7
1,904,511	-				-2.0
1,904,511	-				-2.3
1,904,808	-				-1.0
1,904,808	-				+0.9
1,904,808	-				-0.2
1,904,865	+		GFF4891	0.49	-1.0
1,904,865	+		GFF4891	0.49	-1.9
1,904,865	+		GFF4891	0.49	-0.9
1,904,866	-		GFF4891	0.50	+0.5
1,904,866	-		GFF4891	0.50	-0.1
1,904,866	-		GFF4891	0.50	-0.8
1,904,935	+				+0.3
1,905,118	+				-2.9
1,905,118	+				-1.2
1,905,119	-				-2.0
1,905,119	-				-2.2
1,905,119	-				-2.3
1,905,119	-				-2.6
1,905,364	+		GFF4892	0.16	-2.1
1,905,364	+		GFF4892	0.16	-0.7
1,905,365	-		GFF4892	0.16	-3.7
1,905,365	-		GFF4892	0.16	-4.1
1,905,365	-		GFF4892	0.16	-4.0
1,905,365	-		GFF4892	0.16	-4.9
1,905,475	+		GFF4892	0.21	-5.0
1,905,475	+		GFF4892	0.21	-1.6
1,905,475	+		GFF4892	0.21	-2.9
1,905,476	-		GFF4892	0.21	-2.7
1,905,476	-		GFF4892	0.21	-2.2
1,905,476	-		GFF4892	0.21	-2.6
1,905,575	-		GFF4892	0.24	-3.7
1,905,575	-		GFF4892	0.24	-4.5
1,905,575	-		GFF4892	0.24	-3.7
1,905,628	+		GFF4892	0.27	-2.3
1,905,628	+		GFF4892	0.27	-4.1
1,905,628	+		GFF4892	0.27	-3.2