Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4848

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,854,722	-				+0.4
1,854,722	-				-0.0
1,854,722	-				-0.0
1,855,161	-		GFF4847	0.70	-0.2
1,855,161	-		GFF4847	0.70	+0.1
1,855,161	-		GFF4847	0.70	-0.6
1,855,538	+		GFF4848	0.15	-0.2
1,855,538	+		GFF4848	0.15	-0.9
1,855,538	+		GFF4848	0.15	+0.2
1,855,538	+		GFF4848	0.15	-0.0
1,855,538	+		GFF4848	0.15	+0.2
1,855,538	+		GFF4848	0.15	-1.4
1,855,539	-		GFF4848	0.15	-0.0
1,855,539	-		GFF4848	0.15	+0.1
1,855,539	-		GFF4848	0.15	+0.2
1,855,539	-		GFF4848	0.15	+1.3
1,855,539	-		GFF4848	0.15	-0.0
1,855,658	+		GFF4848	0.26	-0.5
1,855,658	+		GFF4848	0.26	-0.6
1,855,659	-		GFF4848	0.26	-0.2
1,855,659	-		GFF4848	0.26	-0.2
1,855,745	+		GFF4848	0.34	-1.4
1,855,745	+		GFF4848	0.34	-0.6
1,855,745	+		GFF4848	0.34	-1.1
1,855,746	-		GFF4848	0.35	-0.1
1,855,805	+		GFF4848	0.40	+0.3
1,855,806	-		GFF4848	0.40	-0.2
1,855,806	-		GFF4848	0.40	+0.6
1,855,930	+		GFF4848	0.52	+0.5
1,855,930	+		GFF4848	0.52	-0.3
1,855,931	-		GFF4848	0.52	-0.6
1,856,018	+		GFF4848	0.60	+0.6
1,856,018	+		GFF4848	0.60	-0.6
1,856,018	+		GFF4848	0.60	+0.1
1,856,019	-		GFF4848	0.60	+0.3
1,856,019	-		GFF4848	0.60	+0.6
1,856,019	-		GFF4848	0.60	+0.4
1,856,019	-		GFF4848	0.60	-0.2
1,856,019	-		GFF4848	0.60	+0.3
1,856,019	-		GFF4848	0.60	-0.4
1,856,019	-		GFF4848	0.60	-0.6
1,856,019	-		GFF4848	0.60	+0.6
1,856,019	-		GFF4848	0.60	+0.3
1,856,019	-		GFF4848	0.60	-0.1
1,856,019	-		GFF4848	0.60	-0.2
1,856,150	+		GFF4848	0.72	+1.4
1,856,150	+		GFF4848	0.72	-0.2
1,856,151	-		GFF4848	0.72	-0.8
1,856,151	-		GFF4848	0.72	-0.3
1,856,300	+		GFF4848	0.86	+0.4
1,856,300	+		GFF4848	0.86	-0.2
1,856,300	+		GFF4848	0.86	-0.0
1,856,301	-		GFF4848	0.86	+0.4
1,856,301	-		GFF4848	0.86	-1.0
1,856,312	+		GFF4848	0.87	+1.2
1,856,312	+		GFF4848	0.87	+0.7
1,856,312	+		GFF4848	0.87	+0.8
1,856,312	+		GFF4848	0.87	-0.4
1,856,312	+		GFF4848	0.87	+0.4
1,856,313	-		GFF4848	0.87	+0.4
1,856,313	-		GFF4848	0.87	-0.1
1,856,313	-		GFF4848	0.87	-0.9
1,856,313	-		GFF4848	0.87	-0.4
1,856,313	-		GFF4848	0.87	-0.2
1,856,313	-		GFF4848	0.87	-0.8
1,856,660	+		GFF4849	0.88	-0.5
1,856,664	+				+0.9
1,856,666	+				+0.4
1,856,666	+				-0.2
1,856,667	+				+0.1
1,856,667	-				-1.5
1,856,667	-				-0.1
1,856,667	-				-0.7
1,856,711	+				+0.1
1,856,711	+				-0.3
1,856,711	+				+0.2
1,856,711	+				+0.5
1,856,711	+				-1.1
1,856,712	-				+2.2
1,856,712	-				+0.2
1,856,712	-				+1.6
1,856,795	+				-0.2
1,856,795	+				+0.4
1,856,795	+				-0.1
1,856,795	+				+0.1
1,856,796	-				+0.3
1,856,847	+		GFF4850	0.11	-0.3
1,857,267	+		GFF4850	0.46	-0.7
1,857,267	+		GFF4850	0.46	-0.2
1,857,268	-		GFF4850	0.46	-0.1