Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4819

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,828,781	+		GFF4818	0.48	-0.2
1,829,036	+		GFF4818	0.64	+0.7
1,829,036	+		GFF4818	0.64	+0.6
1,829,037	-		GFF4818	0.64	-0.3
1,829,273	+		GFF4818	0.79	-0.3
1,829,477	+				-0.2
1,829,662	-				-0.1
1,829,705	+				-1.0
1,829,706	-				-0.0
1,829,706	-				-0.1
1,830,024	+		GFF4819	0.31	-0.5
1,830,025	-		GFF4819	0.31	-0.0
1,830,181	-		GFF4819	0.48	+0.5
1,830,181	-		GFF4819	0.48	+0.5
1,830,663	+				+1.0
1,830,663	+				+1.1
1,830,663	+				+0.8
1,830,664	-				-0.3
1,830,664	-				-0.3
1,830,664	-				-0.3
1,830,664	-				+0.1
1,830,707	-				-0.2
1,830,707	-				-0.4
1,830,707	-				-0.1
1,830,722	+				-0.8
1,830,741	-				-0.7
1,831,188	+		GFF4820	0.74	+0.2
1,831,297	-				-0.7
1,831,409	+				+0.3
1,831,425	+				-0.1
1,831,426	-				-0.3
1,831,426	-				+0.1
1,831,531	-				-0.3
1,831,644	+		GFF4821	0.14	+0.9
1,831,644	+		GFF4821	0.14	-0.5
1,831,644	+		GFF4821	0.14	-2.1
1,831,644	+		GFF4821	0.14	-1.3
1,831,645	-		GFF4821	0.14	-0.9
1,831,645	-		GFF4821	0.14	-1.7
1,831,645	-		GFF4821	0.14	-0.8
1,831,645	-		GFF4821	0.14	-0.1
1,831,645	-		GFF4821	0.14	-0.0
1,831,645	-		GFF4821	0.14	+0.8
1,831,645	-		GFF4821	0.14	+0.2
1,831,645	-		GFF4821	0.14	-0.3