Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4754

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,760,277	+		GFF4753	0.79	+0.3
1,760,278	-		GFF4753	0.79	+0.9
1,760,280	-		GFF4753	0.79	-0.2
1,760,417	+		GFF4753	0.82	-0.8
1,760,417	+		GFF4753	0.82	-0.1
1,760,418	-		GFF4753	0.82	+0.3
1,760,418	-		GFF4753	0.82	-0.6
1,760,493	-		GFF4753	0.84	-1.0
1,760,493	-		GFF4753	0.84	+1.0
1,760,720	+		GFF4753	0.89	+1.3
1,760,720	+		GFF4753	0.89	+0.7
1,760,744	+		GFF4753	0.90	+0.4
1,761,053	+				-0.1
1,761,054	-				-0.1
1,761,054	-				-0.3
1,761,299	-		GFF4754	0.12	-0.0
1,761,299	-		GFF4754	0.12	-0.2
1,761,299	-		GFF4754	0.12	-0.2
1,761,890	-		GFF4754	0.88	-0.4
1,761,890	-		GFF4754	0.88	-0.6
1,762,117	+				+0.7
1,762,117	+				+0.3
1,762,118	-				+0.7
1,762,118	-				-0.6
1,762,118	-				+0.5
1,762,138	-				-0.5
1,762,146	+				-1.3
1,762,146	+				-0.3
1,762,147	-				-0.0
1,762,147	-				+0.7
1,762,147	-				+0.9
1,762,179	-				-0.5
1,762,221	+				+0.9
1,762,222	-				-1.5
1,762,222	-				+0.2
1,762,222	-				+0.1
1,762,224	+				+0.6
1,762,225	-				-0.5
1,762,225	-				-0.2
1,762,225	-				+0.2
1,762,225	-				-0.8
1,762,225	-				-1.6
1,762,260	+				+0.2
1,762,261	-				-0.2
1,762,261	-				+0.7
1,762,261	-				-0.1
1,762,261	-				+0.8
1,762,261	-				+0.3
1,762,262	+				-0.0
1,762,262	+				-0.3
1,762,262	+				+0.0
1,762,262	+				+0.1
1,762,262	+				-0.4
1,762,262	+				-0.1
1,762,263	-				+0.6
1,762,263	-				-0.9
1,762,263	-				-0.4
1,762,263	-				-0.3
1,762,263	-				+1.5
1,762,263	-				+0.6
1,762,263	-				-0.3
1,762,263	-				+0.0
1,762,263	-				-0.3
1,762,294	+				+0.4
1,762,294	+				-0.1
1,762,294	+				+0.2
1,762,294	+				+0.4
1,762,294	+				-2.5
1,762,294	+				+0.4
1,762,295	-				-1.0
1,762,295	-				-0.1