Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4724

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,675,247	+		GFF4723	0.11	+0.4
1,675,497	-		GFF4723	0.51	+0.4
1,675,497	-		GFF4723	0.51	-2.2
1,675,547	+		GFF4723	0.59	+0.3
1,675,547	+		GFF4723	0.59	-1.3
1,675,548	-		GFF4723	0.60	+0.3
1,675,548	-		GFF4723	0.60	-0.3
1,675,548	-		GFF4723	0.60	+0.2
1,675,598	+		GFF4723	0.68	+1.0
1,675,598	+		GFF4723	0.68	-0.1
1,675,598	+		GFF4723	0.68	-0.1
1,675,741	+				-0.0
1,675,741	+				+0.7
1,675,741	+				+0.6
1,675,741	+				-0.8
1,675,741	+				-0.1
1,675,742	-				+0.3
1,675,793	+				-0.0
1,675,793	+				-1.0
1,675,793	+				-0.1
1,675,793	+				+0.4
1,675,794	-				-2.1
1,675,794	-				-0.6
1,675,794	-				-0.6
1,675,794	-				+0.7
1,675,794	-				-0.3
1,675,794	-				+1.0
1,675,794	-				+0.5
1,675,829	-				-0.2
1,675,861	-				-0.3
1,675,861	-				+0.1
1,676,025	+		GFF4724	0.14	-0.8
1,676,026	-		GFF4724	0.14	-0.7
1,676,026	-		GFF4724	0.14	-0.9
1,676,437	-				-0.3
1,676,437	-				-0.1
1,676,439	+				-0.2
1,676,776	+		GFF4725	0.32	+0.2
1,676,776	+		GFF4725	0.32	-0.6
1,676,777	-		GFF4725	0.32	-0.4
1,676,777	-		GFF4725	0.32	+2.8
1,676,777	-		GFF4725	0.32	-0.1
1,677,094	+		GFF4725	0.68	-0.2
1,677,094	+		GFF4725	0.68	+0.4
1,677,095	-		GFF4725	0.68	+1.5
1,677,095	-		GFF4725	0.68	-0.3
1,677,095	-		GFF4725	0.68	+1.1