Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4674

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,622,447	-				-1.3
1,622,447	-				+0.3
1,622,447	-				-0.3
1,622,447	-				-0.3
1,622,794	-		GFF4673	0.27	+0.2
1,622,794	-		GFF4673	0.27	+0.4
1,622,874	+		GFF4673	0.36	-0.7
1,622,875	-		GFF4673	0.36	-0.3
1,623,036	+		GFF4673	0.54	-0.2
1,623,036	+		GFF4673	0.54	-0.7
1,623,036	+		GFF4673	0.54	-0.0
1,623,037	-		GFF4673	0.54	-0.8
1,623,037	-		GFF4673	0.54	-0.1
1,623,037	-		GFF4673	0.54	-1.0
1,623,037	-		GFF4673	0.54	-0.2
1,623,037	-		GFF4673	0.54	+0.5
1,623,517	+				-0.2
1,623,518	-				+0.4
1,623,518	-				-0.2
1,623,518	-				-0.6
1,623,598	+		GFF4674	0.19	+0.1
1,623,723	+		GFF4674	0.34	-1.3
1,623,723	+		GFF4674	0.34	-0.2
1,623,723	+		GFF4674	0.34	+1.2
1,623,724	-		GFF4674	0.34	-0.0
1,623,724	-		GFF4674	0.34	-0.1
1,623,724	-		GFF4674	0.34	-0.3
1,623,724	-		GFF4674	0.34	-0.1
1,623,724	-		GFF4674	0.34	+0.5
1,624,275	+				+0.5
1,624,275	+				-0.6
1,624,275	+				+0.6
1,624,276	-				+0.1
1,624,276	-				-2.2
1,624,276	-				+0.4
1,624,276	-				-0.7
1,624,779	+		GFF4675	0.67	-0.9
1,624,779	+		GFF4675	0.67	-2.1
1,624,779	+		GFF4675	0.67	-0.4
1,624,779	+		GFF4675	0.67	+1.4
1,624,780	-		GFF4675	0.67	-1.3
1,624,780	-		GFF4675	0.67	-0.6
1,624,780	-		GFF4675	0.67	+0.5
1,624,812	+		GFF4675	0.71	+1.4
1,624,812	+		GFF4675	0.71	+0.4
1,624,813	-		GFF4675	0.71	+0.2
1,624,813	-		GFF4675	0.71	+0.5