Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4498

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,424,238	+				+0.4
1,424,239	-				-0.5
1,424,239	-				+0.1
1,424,239	-				+0.5
1,424,239	-				+0.4
1,424,249	+				-0.3
1,424,249	+				-0.1
1,424,249	+				-0.0
1,424,249	+				+0.3
1,424,249	+				+0.4
1,424,249	+				+0.7
1,424,249	+				+0.3
1,424,249	+				+0.5
1,424,249	+				+0.0
1,424,249	+				-0.6
1,424,249	+				+1.0
1,424,249	+				-0.5
1,424,249	+				-0.3
1,424,249	+				+1.0
1,424,249	+				-0.6
1,424,250	-				+0.2
1,424,250	-				-0.4
1,424,250	-				-0.9
1,424,250	-				+0.0
1,424,250	-				-0.2
1,424,250	-				+0.3
1,424,250	-				+0.8
1,424,250	-				+0.2
1,424,250	-				-0.4
1,424,250	-				-0.9
1,424,250	-				-0.2
1,424,250	-				+0.0
1,424,250	-				-0.0
1,424,250	-				-0.8
1,424,250	-				-0.1
1,424,250	-				+0.0
1,424,250	-				-0.6
1,424,260	+				+0.1
1,424,260	+				-0.7
1,424,261	-				-0.0
1,424,261	-				-0.6
1,424,261	-				+0.8
1,424,285	+				+1.3
1,424,285	+				-0.5
1,424,285	+				-0.6
1,424,286	-				+0.5
1,424,286	-				-0.5
1,424,349	+				-2.2
1,424,349	+				+0.1
1,424,350	-				-0.1
1,424,350	-				-0.7
1,424,350	-				-0.6
1,424,350	-				-0.7
1,424,357	+				+0.3
1,424,358	-				+0.5
1,424,358	-				+0.0
1,424,358	-				+0.4
1,424,360	+				-0.9
1,424,360	+				-0.5
1,424,361	-				-0.2
1,424,361	-				+0.2
1,424,361	-				-0.1
1,424,503	+				-0.5
1,424,503	+				+0.3
1,424,505	-				-2.5
1,424,620	+				+0.2
1,424,620	+				-0.3
1,424,620	+				-0.3
1,424,620	+				+0.3
1,424,620	+				-0.0
1,424,620	+				-0.0
1,424,620	+				-1.4
1,424,620	+				+0.5
1,424,620	+				+0.0
1,424,620	+				-0.1
1,424,620	+				-0.4
1,424,620	+				+0.8
1,424,620	+				+0.3
1,424,620	+				-0.1
1,424,620	+				-0.6
1,424,621	-				-0.8
1,424,621	-				-2.8
1,424,621	-				-0.3
1,424,621	-				-0.1
1,424,621	-				+0.9
1,424,621	-				-0.7
1,424,621	-				+0.5
1,424,621	-				+0.7
1,424,621	-				-0.3
1,424,621	-				+0.8
1,424,621	-				-0.2
1,424,621	-				-0.0
1,424,621	-				-0.9
1,424,621	-				-0.4
1,424,621	-				-0.3
1,424,621	-				-2.3
1,424,863	-				-0.2
1,425,232	+		GFF4498	0.22	-0.6
1,425,232	+		GFF4498	0.22	+0.2
1,425,232	+		GFF4498	0.22	-0.4
1,425,232	+		GFF4498	0.22	-0.2
1,425,233	-		GFF4498	0.22	-0.5
1,425,233	-		GFF4498	0.22	-1.2
1,425,233	-		GFF4498	0.22	-0.0
1,425,233	-		GFF4498	0.22	+0.4
1,425,233	-		GFF4498	0.22	-0.4
1,425,471	+		GFF4498	0.38	-0.9
1,425,718	+		GFF4498	0.54	-0.1
1,425,718	+		GFF4498	0.54	-0.4
1,425,719	-		GFF4498	0.54	+0.5
1,425,739	+		GFF4498	0.56	-1.6
1,425,739	+		GFF4498	0.56	+1.5
1,425,739	+		GFF4498	0.56	-0.0
1,425,739	+		GFF4498	0.56	+0.1
1,425,739	+		GFF4498	0.56	+0.3
1,425,740	-		GFF4498	0.56	+0.6
1,425,740	-		GFF4498	0.56	-0.5
1,425,740	-		GFF4498	0.56	-1.1
1,425,766	+		GFF4498	0.58	-0.1
1,425,766	+		GFF4498	0.58	-0.1
1,425,859	+		GFF4498	0.64	-0.0
1,425,860	-		GFF4498	0.64	+0.1
1,425,860	-		GFF4498	0.64	+2.2
1,425,968	+		GFF4498	0.71	-0.5
1,425,982	+		GFF4498	0.72	-0.5
1,426,408	+				+0.5
1,426,409	-				+0.0
1,426,538	+				-0.1
1,426,538	+				-1.3
1,426,538	+				+0.0
1,426,538	+				-0.1
1,426,539	-				-0.2
1,426,539	-				+0.1
1,426,539	-				+0.9
1,426,539	-				+0.4
1,426,539	-				-1.0
1,426,539	-				-0.6
1,426,539	-				-0.9
1,426,539	-				-0.6
1,426,571	+				-0.2
1,426,571	+				-1.5
1,426,571	+				-0.8
1,426,571	+				+0.4
1,426,571	+				+0.2
1,426,571	+				-0.0
1,426,571	+				-0.2
1,426,571	+				-0.6
1,426,571	+				+0.4
1,426,572	-				+0.2
1,426,572	-				+0.2
1,426,572	-				-0.8
1,426,572	-				+0.2
1,426,572	-				+0.3
1,426,572	-				+1.0
1,426,572	-				-0.8
1,426,580	+		GFF4499	0.10	-0.5
1,427,003	+		GFF4499	0.52	+0.8
1,427,004	-		GFF4499	0.52	+0.5
1,427,120	+		GFF4499	0.64	+0.7
1,427,120	+		GFF4499	0.64	+1.2
1,427,121	-		GFF4499	0.64	+0.5
1,427,121	-		GFF4499	0.64	+1.0
1,427,121	-		GFF4499	0.64	+0.7
1,427,121	-		GFF4499	0.64	-1.9