Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4456 and GFF4457 are separated by 1 nucleotides GFF4457 and GFF4458 are separated by 2 nucleotides GFF4458 and GFF4459 overlap by 4 nucleotides GFF4459 and GFF4460 are separated by 15 nucleotides GFF4460 and GFF4461 overlap by 4 nucleotides
GFF4456 - Two-component system sensory histidine kinase, at 1,384,656 to 1,386,032
GFF4456
GFF4457 - Signal transduction response regulator, at 1,386,034 to 1,386,393
GFF4457
GFF4458 - Histidine kinase, at 1,386,396 to 1,387,739
GFF4458
GFF4459 - Serine-protein kinase RsbW (EC 2.7.11.1), at 1,387,736 to 1,388,173
GFF4459
GFF4460 - Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV, at 1,388,189 to 1,388,533
GFF4460
GFF4461 - UPF0028 protein YchK, at 1,388,530 to 1,389,417
GFF4461
Position (kb) 1386
1387
1388 Strain fitness (log2 ratio) -1
0
1 at 1385.877 kb on + strand, within GFF4456 at 1386.877 kb on - strand, within GFF4458 at 1387.735 kb on + strand at 1387.735 kb on + strand at 1387.736 kb on - strand at 1388.103 kb on - strand, within GFF4459 at 1388.342 kb on + strand, within GFF4460 at 1388.343 kb on - strand, within GFF4460 at 1388.343 kb on - strand, within GFF4460 at 1388.487 kb on - strand, within GFF4460
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 1,385,877 + GFF4456 0.89 +0.1 1,386,877 - GFF4458 0.36 +0.4 1,387,735 + -0.2 1,387,735 + +0.4 1,387,736 - +1.1 1,388,103 - GFF4459 0.84 -0.3 1,388,342 + GFF4460 0.44 -0.9 1,388,343 - GFF4460 0.45 +1.1 1,388,343 - GFF4460 0.45 -0.7 1,388,487 - GFF4460 0.86 +0.2
Or see this region's nucleotide sequence