Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4402

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,328,402	-		GFF4401	0.44	+0.5
1,329,205	+				-0.2
1,329,462	+				+0.8
1,329,462	-				-0.4
1,329,462	-				+0.8
1,329,632	+		GFF4402	0.14	+0.1
1,329,786	-		GFF4402	0.23	+1.1
1,329,786	-		GFF4402	0.23	+0.3
1,329,786	-		GFF4402	0.23	-0.8
1,330,257	-		GFF4402	0.50	+0.2
1,330,292	+		GFF4402	0.52	-1.2
1,330,293	-		GFF4402	0.52	+0.1
1,330,293	-		GFF4402	0.52	+0.2
1,330,293	-		GFF4402	0.52	+0.1
1,330,328	+		GFF4402	0.54	-0.4
1,330,329	-		GFF4402	0.54	+0.1
1,330,418	+		GFF4402	0.59	-0.3
1,330,419	-		GFF4402	0.59	-0.2
1,330,419	-		GFF4402	0.59	-0.7
1,330,419	-		GFF4402	0.59	+1.1
1,330,557	+		GFF4402	0.67	+0.6
1,330,731	+		GFF4402	0.77	-1.0
1,330,731	+		GFF4402	0.77	-0.2
1,330,731	+		GFF4402	0.77	+0.6
1,330,731	+		GFF4402	0.77	-0.7
1,330,732	-		GFF4402	0.77	+0.4
1,330,855	+		GFF4402	0.84	-0.1
1,330,855	+		GFF4402	0.84	-0.2
1,330,855	+		GFF4402	0.84	+0.5
1,330,856	-		GFF4402	0.84	-0.3
1,330,949	+		GFF4402	0.90	+0.0
1,330,949	+		GFF4402	0.90	-0.2
1,330,949	+		GFF4402	0.90	+1.0
1,330,950	-		GFF4402	0.90	-0.1
1,330,950	-		GFF4402	0.90	-0.9
1,330,950	-		GFF4402	0.90	+0.3
1,330,982	+				-1.7
1,331,034	+				-0.0
1,331,034	+				+0.2
1,331,035	-				+0.1
1,331,035	-				+0.3
1,331,049	+				-0.3
1,331,070	+				+0.5
1,331,070	+				-0.4
1,331,070	+				+1.9
1,331,071	-				+0.1
1,331,071	-				-0.4
1,331,073	+				+2.1
1,331,073	+				+1.0
1,331,074	-				+0.2
1,331,119	+				+0.4
1,331,119	+				-0.1
1,331,119	+				-0.0
1,331,119	+				-0.2
1,331,120	-				+0.3
1,331,120	-				-0.2
1,331,129	+				+0.1
1,331,129	+				-0.2
1,331,129	+				+0.2
1,331,130	-				-0.5
1,331,212	-				-2.0
1,331,213	+				+0.7
1,331,213	+				-0.6
1,331,213	+				+0.4
1,331,213	+				+0.8
1,331,213	+				+1.4
1,331,214	-				+0.3
1,331,259	+				+0.3
1,331,259	+				+0.2
1,331,260	-				-0.4
1,331,281	+				-0.4
1,331,281	+				+0.1
1,331,303	+				+0.0
1,331,303	+				-0.3
1,331,304	-				-0.4
1,331,304	-				+1.6
1,331,306	-				-0.1
1,331,365	+				+1.3
1,331,413	-				+1.3
1,331,413	-				+0.1
1,331,413	-				-0.6
1,331,413	-				+0.6
1,331,421	-				-0.0
1,331,687	-				-1.7
1,331,687	-				-0.8
1,331,687	-				+0.2
1,331,735	+				-0.8
1,331,735	+				+0.1
1,331,735	+				+0.6
1,331,735	+				-0.7
1,331,735	+				+0.0
1,331,736	-				-0.0
1,331,736	-				+1.0
1,331,736	-				+0.5
1,331,736	-				+0.8
1,331,736	-				+0.2
1,331,736	-				-0.1
1,331,736	-				+0.1
1,331,736	-				-0.3
1,331,736	-				+0.6
1,331,736	-				+0.3
1,331,736	-				+1.2
1,331,736	-				-0.9
1,331,739	+				+2.0
1,331,739	+				-1.1
1,331,739	+				-0.2
1,331,739	+				+0.4
1,331,739	+				+1.1
1,331,739	+				+0.4
1,331,739	+				-0.2
1,331,739	+				+0.1
1,331,739	+				-0.5
1,331,740	-				-0.6
1,331,740	-				+1.0
1,331,740	-				+0.5
1,331,740	-				+0.8
1,331,740	-				+0.5
1,331,740	-				-0.2
1,331,740	-				+0.2
1,331,740	-				+0.9
1,331,740	-				-2.3
1,331,740	-				+0.2
1,331,740	-				-1.4
1,331,740	-				-0.6
1,331,740	-				+0.3
1,331,754	+				+0.7
1,331,755	-				-1.4
1,331,764	-				-0.1
1,331,767	+				-0.6
1,331,892	+				-0.1
1,331,892	+				+0.0
1,331,892	+				-0.8
1,331,893	-				-1.1
1,331,893	-				-0.4
1,331,893	-				+0.1
1,331,933	+				-0.3
1,331,965	+				+0.6
1,331,967	+				+0.0
1,331,967	+				+0.3
1,331,967	+				-0.8
1,331,967	+				+1.2
1,331,968	-				-0.0
1,331,968	-				-0.5
1,331,968	-				-0.3
1,331,968	-				+1.1
1,331,968	-				-0.1
1,331,968	-				-0.8
1,331,968	-				-2.0
1,331,968	-				-0.3
1,331,971	+				-0.1
1,331,971	+				-0.1
1,331,971	+				+0.4
1,331,971	+				+0.5
1,331,971	+				+0.4
1,331,971	+				+0.3
1,331,971	+				+0.3
1,331,971	+				+0.8
1,331,971	+				-0.2
1,331,972	-				-0.3
1,331,972	-				+1.1
1,331,972	-				+0.4
1,331,972	-				-0.0
1,331,972	-				-0.6
1,331,972	-				-0.4
1,331,972	-				+0.5
1,331,972	-				+0.6
1,331,972	-				-0.8
1,331,972	-				+0.9
1,332,004	+				+0.1
1,332,004	+				+0.3
1,332,004	+				-0.5
1,332,004	+				-0.2
1,332,005	-				+1.0
1,332,005	-				-0.8
1,332,005	-				-0.1
1,332,105	+				-0.3