Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4313

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,239,700	+		GFF4311	0.84	+0.6
1,239,701	-		GFF4311	0.84	+0.9
1,239,701	-		GFF4311	0.84	+0.7
1,239,715	+		GFF4311	0.85	+0.6
1,239,715	+		GFF4311	0.85	-0.2
1,239,715	+		GFF4311	0.85	-0.7
1,239,779	-		GFF4311	0.89	+1.0
1,239,805	+				+0.2
1,239,806	-				+0.1
1,239,806	-				+2.2
1,239,806	-				+1.0
1,239,880	+				-0.1
1,239,997	+				+0.5
1,239,997	+				+0.3
1,239,997	+				+0.6
1,239,997	+				-0.9
1,239,998	-				-0.2
1,240,045	+				+0.4
1,240,045	+				-0.3
1,240,085	+				+0.3
1,240,085	+				-0.4
1,240,085	+				-0.4
1,240,085	+				+0.2
1,240,085	+				-0.9
1,240,085	+				-0.3
1,240,085	+				-0.2
1,240,086	-				-0.4
1,240,086	-				-0.2
1,240,086	-				-0.9
1,240,086	-				+0.4
1,240,086	-				-1.7
1,240,086	-				+0.5
1,240,086	-				-0.5
1,240,086	-				-0.3
1,240,086	-				-0.2
1,240,229	+		GFF4312	0.35	+1.1
1,240,229	+		GFF4312	0.35	+0.0
1,240,229	+		GFF4312	0.35	-0.8
1,240,230	-		GFF4312	0.35	+0.4
1,240,230	-		GFF4312	0.35	+0.6
1,240,235	+		GFF4312	0.36	-0.6
1,240,235	+		GFF4312	0.36	-0.2
1,240,520	+				-0.0
1,240,520	+				+1.1
1,240,520	+				+0.4
1,240,520	+				-0.8
1,240,520	+				-0.0
1,240,521	-				-0.9
1,240,521	-				-0.7
1,240,521	-				+1.0
1,240,943	+		GFF4313	0.31	-0.0
1,240,943	+		GFF4313	0.31	+0.1
1,240,943	+		GFF4313	0.31	-0.3
1,240,944	-		GFF4313	0.31	-0.1
1,240,944	-		GFF4313	0.31	+0.2
1,240,944	-		GFF4313	0.31	-1.9
1,240,944	-		GFF4313	0.31	-0.0
1,241,282	+		GFF4313	0.58	-0.7
1,241,283	-		GFF4313	0.58	+0.3
1,241,481	-		GFF4313	0.74	+0.8
1,242,053	+		GFF4314	0.32	-0.9
1,242,053	+		GFF4314	0.32	+0.6
1,242,062	+		GFF4314	0.33	-0.1
1,242,063	-		GFF4314	0.34	+0.3
1,242,065	+		GFF4314	0.34	+0.0
1,242,066	-		GFF4314	0.34	-0.5
1,242,066	-		GFF4314	0.34	+0.9
1,242,215	+		GFF4314	0.54	+0.3
1,242,215	+		GFF4314	0.54	+0.5
1,242,215	+		GFF4314	0.54	+0.4
1,242,216	-		GFF4314	0.54	+0.0
1,242,216	-		GFF4314	0.54	-0.3
1,242,216	-		GFF4314	0.54	-0.2
1,242,216	-		GFF4314	0.54	+0.2
1,242,216	-		GFF4314	0.54	+1.2
1,242,260	+		GFF4314	0.60	+0.1
1,242,588	+				+0.5
1,242,589	-				+0.3