Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4249

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,168,221	+				-0.0
1,168,222	-				-0.2
1,168,222	-				+0.7
1,168,238	+				+0.0
1,168,238	+				-0.1
1,168,239	-				+0.1
1,168,239	-				+0.8
1,168,270	-				+2.1
1,168,342	-				-0.7
1,168,342	-				-0.0
1,168,356	+				-0.4
1,168,356	+				+0.0
1,168,356	+				+0.4
1,168,357	-				+0.4
1,168,357	-				+0.2
1,168,357	-				+1.1
1,168,357	-				-0.2
1,168,357	-				-0.3
1,168,357	-				-0.6
1,168,376	+				-0.4
1,168,376	+				+1.2
1,168,377	-				-0.5
1,168,377	-				+0.1
1,168,388	+				-1.3
1,168,388	+				+1.1
1,168,388	+				+0.7
1,168,388	+				-0.1
1,168,388	+				-0.1
1,168,388	+				+0.6
1,168,388	+				-0.7
1,168,388	+				+0.6
1,168,389	-				+0.7
1,168,389	-				+0.0
1,168,389	-				+0.1
1,168,389	-				-0.2
1,168,389	-				+1.0
1,168,390	+				-0.1
1,168,390	+				-0.7
1,168,390	+				+0.2
1,168,390	+				-0.3
1,168,390	+				+0.4
1,168,390	+				-0.5
1,168,390	+				+0.1
1,168,390	+				-0.1
1,168,390	+				+1.4
1,168,391	-				-0.1
1,168,391	-				-0.1
1,168,391	-				-0.4
1,168,391	-				-0.3
1,168,391	-				+0.4
1,168,391	-				-0.1
1,168,391	-				+0.1
1,168,391	-				+0.3
1,168,391	-				-0.1
1,168,391	-				+0.6
1,168,391	-				-0.3
1,168,391	-				+0.6
1,168,514	+				+0.2
1,168,514	+				-0.5
1,168,514	+				+1.0
1,168,514	+				-1.6
1,168,515	-				+0.9
1,168,606	+				+0.7
1,168,606	+				+0.0
1,168,606	+				+0.0
1,168,606	+				-0.3
1,168,606	+				+0.8
1,168,606	+				-0.4
1,168,607	-				-0.3
1,168,607	-				+0.5
1,168,607	-				+0.0
1,168,607	-				+0.7
1,168,607	-				+0.9
1,168,607	-				+0.3
1,168,607	-				-0.2
1,168,607	-				-0.3
1,168,642	+				-0.9
1,168,642	+				-0.0
1,168,642	+				+0.5
1,168,642	+				-0.0
1,168,642	+				-0.6
1,168,643	-				+0.5
1,168,643	-				+0.1
1,168,643	-				+1.6
1,168,643	-				-0.0
1,168,644	+				-0.1
1,168,644	+				+0.4
1,168,644	+				+0.6
1,168,644	+				-0.2
1,168,645	-				+0.3
1,168,645	-				-0.7
1,168,645	-				+0.3
1,168,645	-				+0.2
1,168,645	-				+0.0
1,168,645	-				+0.4
1,168,645	-				-0.5
1,168,645	-				-0.5
1,168,645	-				-0.8
1,168,645	-				-0.5
1,168,646	+				-1.6
1,168,646	+				-0.0
1,168,646	+				+0.2
1,168,646	+				-0.2
1,168,646	+				-0.4
1,168,646	+				+0.3
1,168,646	+				-0.0
1,168,647	-				-0.2
1,168,647	-				-1.0
1,168,647	-				+0.2
1,168,647	-				-0.2
1,168,647	-				-0.0
1,168,647	-				-0.0
1,168,647	-				+0.1
1,168,647	-				+0.9
1,168,681	+				+0.4
1,168,724	+				+0.7
1,168,725	-				+0.2
1,168,759	+				-0.1
1,168,759	+				-0.1
1,168,760	-				-0.7
1,168,760	-				-2.3
1,168,812	+				+0.4
1,168,812	+				-0.4
1,168,812	+				+0.2
1,168,812	+				+0.1
1,168,813	-				+0.3
1,168,813	-				+0.8
1,168,944	+		GFF4248	0.55	+0.4
1,168,944	+		GFF4248	0.55	-0.3
1,168,945	-		GFF4248	0.55	+1.4
1,168,945	-		GFF4248	0.55	-0.8
1,168,945	-		GFF4248	0.55	-1.1
1,168,945	-		GFF4248	0.55	-0.2
1,168,945	-		GFF4248	0.55	+0.2
1,168,945	-		GFF4248	0.55	-0.1
1,168,948	+		GFF4248	0.56	-0.2
1,168,948	+		GFF4248	0.56	+0.4
1,168,948	+		GFF4248	0.56	+1.0
1,168,949	-		GFF4248	0.57	-0.0
1,168,949	-		GFF4248	0.57	-0.3
1,169,252	-				+0.5
1,169,287	+				+0.6
1,169,390	+		GFF4249	0.14	-0.3
1,169,390	+		GFF4249	0.14	+1.7
1,169,391	-		GFF4249	0.14	-0.2
1,169,391	-		GFF4249	0.14	+0.5
1,169,391	-		GFF4249	0.14	-1.7
1,169,410	+		GFF4249	0.14	-1.5
1,169,454	-		GFF4249	0.16	+0.4
1,169,454	-		GFF4249	0.16	-0.2
1,169,470	+		GFF4249	0.17	-0.4
1,169,471	-		GFF4249	0.17	+0.0
1,169,471	-		GFF4249	0.17	-0.2
1,169,498	+		GFF4249	0.18	-0.1
1,169,498	+		GFF4249	0.18	-0.6
1,169,575	+		GFF4249	0.21	-0.2
1,169,576	-		GFF4249	0.21	-0.3
1,169,576	-		GFF4249	0.21	+0.8
1,169,654	+		GFF4249	0.24	+0.1
1,169,655	-		GFF4249	0.24	+0.0
1,169,655	-		GFF4249	0.24	-0.0
1,169,699	+		GFF4249	0.26	+0.9
1,169,699	+		GFF4249	0.26	+1.2
1,169,700	-		GFF4249	0.26	+0.9
1,169,700	-		GFF4249	0.26	+1.6
1,169,951	+		GFF4249	0.36	-0.6
1,169,951	+		GFF4249	0.36	+0.1
1,169,951	+		GFF4249	0.36	-1.0
1,169,951	+		GFF4249	0.36	+0.2
1,169,951	+		GFF4249	0.36	-0.2
1,169,952	-		GFF4249	0.36	+0.8
1,169,952	-		GFF4249	0.36	-1.6
1,169,952	-		GFF4249	0.36	-2.0
1,169,952	-		GFF4249	0.36	-0.7
1,169,952	-		GFF4249	0.36	-0.6
1,169,952	-		GFF4249	0.36	-0.3
1,170,026	+		GFF4249	0.39	+0.4
1,170,026	+		GFF4249	0.39	-1.7
1,170,026	+		GFF4249	0.39	+0.1
1,170,026	+		GFF4249	0.39	+0.0
1,170,027	-		GFF4249	0.39	+0.2
1,170,027	-		GFF4249	0.39	-0.6
1,170,027	-		GFF4249	0.39	+0.8
1,170,027	-		GFF4249	0.39	-0.2
1,170,027	-		GFF4249	0.39	+0.2
1,170,027	-		GFF4249	0.39	-0.4
1,170,027	-		GFF4249	0.39	+0.6
1,170,103	+		GFF4249	0.43	+0.9
1,170,104	-		GFF4249	0.43	-0.0
1,170,159	+		GFF4249	0.45	+0.7
1,170,160	-		GFF4249	0.45	+1.6
1,170,300	+		GFF4249	0.51	-0.0
1,170,300	+		GFF4249	0.51	+0.1
1,170,301	-		GFF4249	0.51	-0.3
1,170,301	-		GFF4249	0.51	-0.6
1,170,301	-		GFF4249	0.51	-0.2
1,170,301	-		GFF4249	0.51	-0.1
1,170,527	+		GFF4249	0.60	-0.4
1,170,527	+		GFF4249	0.60	+0.4
1,170,527	+		GFF4249	0.60	+0.6
1,170,527	+		GFF4249	0.60	-0.1
1,170,527	+		GFF4249	0.60	-0.0
1,170,527	+		GFF4249	0.60	+0.5
1,170,527	+		GFF4249	0.60	-1.0
1,170,527	+		GFF4249	0.60	-1.2
1,170,527	+		GFF4249	0.60	+0.2
1,170,527	+		GFF4249	0.60	+0.1
1,170,527	+		GFF4249	0.60	-0.6
1,170,527	+		GFF4249	0.60	+0.2
1,170,528	-		GFF4249	0.60	-0.7
1,170,528	-		GFF4249	0.60	+0.1
1,170,528	-		GFF4249	0.60	-0.3
1,170,528	-		GFF4249	0.60	+0.5
1,170,528	-		GFF4249	0.60	+0.6
1,170,528	-		GFF4249	0.60	+0.3
1,170,528	-		GFF4249	0.60	+0.4
1,170,528	-		GFF4249	0.60	+0.0
1,170,528	-		GFF4249	0.60	+0.1
1,170,528	-		GFF4249	0.60	+1.0
1,170,528	-		GFF4249	0.60	-0.0
1,170,528	-		GFF4249	0.60	+0.1
1,170,628	+		GFF4249	0.64	-0.0
1,170,629	-		GFF4249	0.64	-0.7
1,170,654	-		GFF4249	0.65	+0.5
1,170,899	+		GFF4249	0.75	+0.0
1,170,899	+		GFF4249	0.75	-1.0
1,170,899	+		GFF4249	0.75	-0.2
1,170,900	-		GFF4249	0.75	+0.6
1,170,900	-		GFF4249	0.75	-0.2
1,170,920	-		GFF4249	0.76	+0.6
1,170,944	-		GFF4249	0.77	+0.6
1,170,968	+		GFF4249	0.78	-1.0
1,170,968	+		GFF4249	0.78	+0.4
1,170,968	+		GFF4249	0.78	+0.7
1,170,968	+		GFF4249	0.78	+0.6
1,170,969	-		GFF4249	0.78	-0.1
1,170,969	-		GFF4249	0.78	-0.2
1,170,969	-		GFF4249	0.78	-0.0
1,170,969	-		GFF4249	0.78	-0.6
1,170,969	-		GFF4249	0.78	-0.3
1,171,006	+		GFF4249	0.79	+0.1
1,171,006	+		GFF4249	0.79	+1.4
1,171,006	+		GFF4249	0.79	-0.7
1,171,007	-		GFF4249	0.79	+1.2
1,171,007	-		GFF4249	0.79	-0.0
1,171,007	-		GFF4249	0.79	-0.3
1,171,013	+		GFF4249	0.80	-0.8
1,171,013	+		GFF4249	0.80	+0.4
1,171,013	+		GFF4249	0.80	+0.0
1,171,013	+		GFF4249	0.80	+0.6
1,171,014	-		GFF4249	0.80	+0.7
1,171,014	-		GFF4249	0.80	-0.4
1,171,014	-		GFF4249	0.80	+0.0
1,171,121	+		GFF4249	0.84	+0.2
1,171,122	-		GFF4249	0.84	+0.3
1,171,170	-		GFF4249	0.86	-0.3
1,171,170	-		GFF4249	0.86	+0.8
1,171,170	-		GFF4249	0.86	-0.4
1,171,219	+		GFF4249	0.88	-0.2
1,171,219	+		GFF4249	0.88	+0.3
1,171,219	+		GFF4249	0.88	-0.3
1,171,220	-		GFF4249	0.88	-0.0
1,171,220	-		GFF4249	0.88	+0.1
1,171,278	+				-1.6
1,171,278	+				+0.2
1,171,278	+				+0.3
1,171,278	+				-1.2
1,171,278	+				+0.1
1,171,278	+				+0.4
1,171,279	-				+0.3
1,171,279	-				-0.5
1,171,279	-				-0.6
1,171,279	-				+0.8
1,171,279	-				-0.1
1,171,305	-				-0.1
1,171,305	-				+0.8
1,171,313	+				+0.6
1,171,313	+				+0.3
1,171,313	+				+0.0
1,171,314	-				-0.7
1,171,314	-				+0.4
1,171,314	-				-0.2
1,171,314	-				-0.2
1,171,324	+				-0.4
1,171,325	-				+0.3
1,171,379	+				+1.3
1,171,379	+				+0.1
1,171,379	+				-1.2
1,171,380	-				-0.1
1,171,380	-				+0.2
1,171,394	+				-0.3
1,171,394	+				+0.5
1,171,394	+				-0.2
1,171,394	+				+0.0
1,171,394	+				+0.6
1,171,394	+				-1.4
1,171,394	+				-0.5
1,171,394	+				+0.9
1,171,394	+				+0.5
1,171,394	+				+0.5
1,171,394	+				+0.2
1,171,395	-				-0.1
1,171,395	-				+0.8
1,171,395	-				+0.2
1,171,395	-				+1.1
1,171,395	-				+0.0
1,171,395	-				+0.3
1,171,395	-				-0.8
1,171,395	-				+1.0
1,171,395	-				-0.2
1,171,395	-				+0.1
1,171,395	-				-0.1
1,171,395	-				+0.8
1,171,395	-				-0.6
1,171,395	-				-0.3
1,171,395	-				+0.8
1,171,436	+				+0.4
1,171,437	-				-0.2
1,171,496	+				-1.6
1,171,575	+				+0.1
1,171,575	+				+1.4
1,171,575	+				+1.4
1,171,575	+				+0.3
1,171,575	+				+0.6
1,171,576	-				+0.4
1,171,576	-				+0.1
1,171,576	-				+0.2
1,171,576	-				+0.9
1,171,678	-				-1.5
1,171,678	-				+0.4
1,171,678	-				-1.0
1,171,704	+				+0.1
1,171,927	+				-0.1
1,171,927	+				+0.0
1,171,927	+				+0.5
1,171,928	-				-0.9
1,171,928	-				+1.3
1,171,928	-				+0.4
1,171,928	-				+0.4
1,171,928	-				+0.1
1,171,928	-				-0.5
1,171,942	+				-0.3
1,171,958	+				-1.2
1,171,958	+				-0.4
1,171,958	+				+0.4
1,171,958	+				+0.4
1,171,958	+				+1.8
1,171,958	+				+0.5
1,171,958	+				-0.2
1,171,959	-				-0.2
1,171,959	-				+0.0
1,171,959	-				+0.5
1,171,959	-				-0.9
1,171,959	-				+0.2
1,172,060	+				-1.4
1,172,061	-				-0.5
1,172,138	+				-0.4
1,172,139	-				+0.4
1,172,139	-				-0.2
1,172,186	+				-0.0
1,172,257	+				-1.1
1,172,258	-				+0.2
1,172,258	-				+0.3
1,172,263	+				-0.1
1,172,293	+				-0.3
1,172,293	+				-0.6
1,172,293	+				+0.1
1,172,294	-				+0.2
1,172,294	-				+1.1
1,172,294	-				+0.4
1,172,294	-				-0.2
1,172,294	-				+0.0
1,172,294	-				+0.2
1,172,294	-				+0.5
1,172,294	-				+0.8
1,172,294	-				-0.4
1,172,294	-				+1.1
1,172,294	-				+0.6
1,172,295	-				-0.4
1,172,326	+				+0.6
1,172,326	+				-1.4
1,172,332	+				-0.3
1,172,332	+				-0.0
1,172,443	+				+0.3
1,172,443	+				+0.7
1,172,444	-				-0.7
1,172,444	-				-0.3
1,172,445	+				-0.5
1,172,446	-				+0.4
1,172,446	-				+1.1
1,172,470	+				-0.2
1,172,477	+				-0.1
1,172,477	+				-0.4
1,172,477	+				+0.9
1,172,478	-				+0.1