Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4226

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,138,287	-		GFF4225	0.33	+0.5
1,138,484	+		GFF4225	0.51	+0.3
1,138,484	+		GFF4225	0.51	-0.1
1,138,484	+		GFF4225	0.51	+0.3
1,138,485	-		GFF4225	0.51	-0.3
1,138,485	-		GFF4225	0.51	+0.0
1,138,485	-		GFF4225	0.51	-0.0
1,138,652	+		GFF4225	0.66	+0.5
1,138,652	+		GFF4225	0.66	+1.0
1,138,652	+		GFF4225	0.66	+0.6
1,138,653	-		GFF4225	0.67	-0.6
1,138,653	-		GFF4225	0.67	+0.3
1,138,653	-		GFF4225	0.67	+0.4
1,138,653	-		GFF4225	0.67	-0.4
1,138,653	-		GFF4225	0.67	-0.0
1,138,653	-		GFF4225	0.67	+0.3
1,138,653	-		GFF4225	0.67	-0.0
1,138,653	-		GFF4225	0.67	-0.5
1,139,018	+				-1.0
1,139,019	-				-0.1
1,139,223	-				-0.6
1,139,318	+		GFF4226	0.11	+0.1
1,139,318	+		GFF4226	0.11	-0.7
1,139,318	+		GFF4226	0.11	-0.6
1,139,319	-		GFF4226	0.11	-0.8
1,139,319	-		GFF4226	0.11	-1.4
1,139,319	-		GFF4226	0.11	-1.3
1,139,319	-		GFF4226	0.11	-0.3
1,139,319	-		GFF4226	0.11	-1.1
1,139,319	-		GFF4226	0.11	+0.6
1,139,319	-		GFF4226	0.11	+0.7
1,139,319	-		GFF4226	0.11	-0.6
1,139,319	-		GFF4226	0.11	-0.5
1,139,333	+		GFF4226	0.11	+0.4
1,139,333	+		GFF4226	0.11	-1.4
1,139,334	-		GFF4226	0.11	+0.6
1,139,334	-		GFF4226	0.11	-0.8
1,139,378	+		GFF4226	0.14	-0.8
1,139,379	-		GFF4226	0.14	+0.0
1,139,379	-		GFF4226	0.14	-1.7
1,139,387	+		GFF4226	0.14	-0.8
1,139,387	+		GFF4226	0.14	-0.3
1,139,387	+		GFF4226	0.14	+0.4
1,139,388	-		GFF4226	0.14	-0.8
1,139,388	-		GFF4226	0.14	-1.2
1,139,388	-		GFF4226	0.14	+1.6
1,139,870	+		GFF4226	0.37	-1.2
1,139,870	+		GFF4226	0.37	-0.1
1,139,966	+		GFF4226	0.42	+0.1
1,139,967	-		GFF4226	0.42	-1.0
1,139,967	-		GFF4226	0.42	+0.0
1,140,050	+		GFF4226	0.46	+0.1
1,140,051	-		GFF4226	0.46	-0.5
1,140,092	+		GFF4226	0.48	-1.4
1,140,092	+		GFF4226	0.48	-0.3
1,140,092	+		GFF4226	0.48	+0.6
1,140,093	-		GFF4226	0.48	-1.3
1,140,218	+		GFF4226	0.54	-1.0
1,140,218	+		GFF4226	0.54	-2.9
1,140,219	-		GFF4226	0.54	-0.7
1,140,219	-		GFF4226	0.54	-0.3
1,140,219	-		GFF4226	0.54	-0.2
1,140,338	+		GFF4226	0.60	+0.3
1,140,339	-		GFF4226	0.60	-0.4
1,140,377	+		GFF4226	0.62	+0.2
1,140,377	+		GFF4226	0.62	+0.3
1,140,453	-		GFF4226	0.65	-0.8
1,140,476	+		GFF4226	0.66	-0.0
1,140,476	+		GFF4226	0.66	+0.2
1,140,476	+		GFF4226	0.66	+1.4
1,140,476	+		GFF4226	0.66	-0.5
1,140,476	+		GFF4226	0.66	+0.7
1,140,477	-		GFF4226	0.66	-0.5
1,140,477	-		GFF4226	0.66	-0.3
1,140,477	-		GFF4226	0.66	+0.3
1,140,501	-		GFF4226	0.68	-0.3
1,140,515	+		GFF4226	0.68	-0.5
1,140,515	+		GFF4226	0.68	-1.2
1,140,515	+		GFF4226	0.68	-1.0
1,140,515	+		GFF4226	0.68	-0.2
1,140,516	-		GFF4226	0.68	-0.4
1,140,516	-		GFF4226	0.68	-1.0
1,140,516	-		GFF4226	0.68	-1.8
1,140,516	-		GFF4226	0.68	-0.7
1,140,516	-		GFF4226	0.68	-0.1
1,140,887	+		GFF4226	0.86	+0.9
1,140,887	+		GFF4226	0.86	-1.4
1,140,887	+		GFF4226	0.86	+0.8
1,140,888	+		GFF4226	0.86	+0.0
1,140,888	-		GFF4226	0.86	-0.7
1,140,888	-		GFF4226	0.86	+0.4
1,140,888	-		GFF4226	0.86	-0.7
1,141,031	+				-0.7
1,141,031	+				-0.9
1,141,031	+				-3.1
1,141,032	-				-0.3
1,141,079	+				+0.6
1,141,079	+				-1.2
1,141,079	+				+0.3
1,141,079	+				-0.2
1,141,079	+				+0.0
1,141,079	+				-0.7
1,141,079	+				-0.2
1,141,079	+				-0.9
1,141,080	-				-0.3
1,141,080	-				-0.3
1,141,080	-				-0.3
1,141,080	-				-1.2
1,141,080	-				-0.7
1,141,080	-				+0.8
1,141,844	+		GFF4228	0.38	-0.6
1,141,844	+		GFF4228	0.38	-0.2
1,141,918	+		GFF4228	0.55	-0.1
1,141,919	-		GFF4228	0.56	-0.1
1,141,919	-		GFF4228	0.56	-0.4
1,141,919	-		GFF4228	0.56	-0.4
1,141,919	-		GFF4228	0.56	+1.2
1,142,148	+				-0.5
1,142,155	+				-0.2
1,142,156	-				-0.2