Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3599 and GFF3600 are separated by 281 nucleotides GFF3600 and GFF3601 overlap by 4 nucleotides GFF3601 and GFF3602 are separated by 138 nucleotides GFF3602 and GFF3603 are separated by 27 nucleotides
GFF3599 - DNA mismatch repair protein MutS, at 486,409 to 489,069
GFF3599
GFF3600 - Ynd, at 489,351 to 489,977
GFF3600
GFF3601 - Ync, at 489,974 to 490,885
GFF3601
GFF3602 - hypothetical protein, at 491,024 to 491,566
GFF3602
GFF3603 - Plasmid conjugative transfer endonuclease, at 491,594 to 492,124
GFF3603
Position (kb) 489
490
491 Strain fitness (log2 ratio) -2
-1
0
1
2 at 488.996 kb on + strand at 488.996 kb on + strand at 488.997 kb on - strand at 488.997 kb on - strand at 488.997 kb on - strand at 489.106 kb on - strand at 489.108 kb on - strand at 489.112 kb on + strand at 489.112 kb on + strand at 489.112 kb on + strand at 489.112 kb on + strand at 489.112 kb on + strand at 489.112 kb on + strand at 489.113 kb on - strand at 489.113 kb on - strand at 489.113 kb on - strand at 489.113 kb on - strand at 489.113 kb on - strand at 489.120 kb on - strand at 489.120 kb on - strand at 489.120 kb on - strand at 489.172 kb on - strand at 489.986 kb on + strand at 489.986 kb on + strand at 489.987 kb on - strand at 489.987 kb on - strand at 489.991 kb on - strand at 490.412 kb on + strand, within GFF3601 at 490.412 kb on + strand, within GFF3601 at 490.412 kb on + strand, within GFF3601 at 490.413 kb on - strand, within GFF3601 at 490.529 kb on + strand, within GFF3601 at 490.529 kb on + strand, within GFF3601 at 490.530 kb on - strand, within GFF3601 at 490.763 kb on - strand, within GFF3601 at 490.864 kb on - strand at 490.864 kb on - strand at 490.864 kb on - strand at 490.864 kb on - strand at 490.907 kb on + strand at 490.908 kb on - strand at 490.983 kb on + strand at 490.983 kb on + strand at 491.025 kb on + strand at 491.026 kb on - strand at 491.102 kb on - strand, within GFF3602 at 491.650 kb on - strand, within GFF3603
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 488,996 + -0.4 488,996 + +0.4 488,997 - -0.6 488,997 - -1.0 488,997 - -0.9 489,106 - -0.3 489,108 - -0.0 489,112 + -0.5 489,112 + -0.7 489,112 + +0.6 489,112 + -1.2 489,112 + -0.1 489,112 + -0.3 489,113 - +0.4 489,113 - +0.4 489,113 - +0.6 489,113 - +0.1 489,113 - -2.0 489,120 - +2.2 489,120 - +0.2 489,120 - -0.3 489,172 - -0.9 489,986 + -0.1 489,986 + -0.3 489,987 - +0.7 489,987 - -0.1 489,991 - +0.3 490,412 + GFF3601 0.48 -0.2 490,412 + GFF3601 0.48 +0.1 490,412 + GFF3601 0.48 -0.1 490,413 - GFF3601 0.48 -1.2 490,529 + GFF3601 0.61 +0.2 490,529 + GFF3601 0.61 +1.6 490,530 - GFF3601 0.61 -1.0 490,763 - GFF3601 0.87 +0.5 490,864 - +1.1 490,864 - -0.2 490,864 - -1.1 490,864 - -0.2 490,907 + +0.4 490,908 - +0.6 490,983 + -0.3 490,983 + -0.0 491,025 + +0.0 491,026 - -0.4 491,102 - GFF3602 0.14 -0.4 491,650 - GFF3603 0.11 -0.6
Or see this region's nucleotide sequence