Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3553 and GFF3554 are separated by 17 nucleotides GFF3554 and GFF3555 are separated by 793 nucleotides
GFF3553 - FIG00352444: hypothetical protein, at 443,430 to 443,975
GFF3553
GFF3554 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 443,993 to 445,183
GFF3554
GFF3555 - Fatty acid desaturase, at 445,977 to 446,354
GFF3555
Position (kb) 443
444
445
446 Strain fitness (log2 ratio) -1
0
1
2 at 443.021 kb on + strand at 443.022 kb on - strand at 443.022 kb on - strand at 443.135 kb on + strand at 443.135 kb on + strand at 443.135 kb on + strand at 443.135 kb on + strand at 443.135 kb on + strand at 443.136 kb on - strand at 443.136 kb on - strand at 443.240 kb on + strand at 443.240 kb on + strand at 443.240 kb on + strand at 443.240 kb on + strand at 443.241 kb on - strand at 443.243 kb on - strand at 443.281 kb on - strand at 443.468 kb on - strand at 443.468 kb on - strand at 443.470 kb on + strand at 443.470 kb on + strand at 443.470 kb on + strand at 443.470 kb on + strand at 443.470 kb on + strand at 443.471 kb on - strand at 443.471 kb on - strand at 443.471 kb on - strand at 443.492 kb on - strand, within GFF3553 at 443.492 kb on - strand, within GFF3553 at 443.492 kb on - strand, within GFF3553 at 443.494 kb on - strand, within GFF3553 at 443.773 kb on + strand, within GFF3553 at 443.773 kb on + strand, within GFF3553 at 443.773 kb on + strand, within GFF3553 at 443.774 kb on - strand, within GFF3553 at 443.774 kb on - strand, within GFF3553 at 443.774 kb on - strand, within GFF3553 at 443.774 kb on - strand, within GFF3553 at 444.005 kb on + strand at 444.058 kb on - strand at 444.312 kb on + strand, within GFF3554 at 444.312 kb on + strand, within GFF3554 at 444.312 kb on + strand, within GFF3554 at 444.312 kb on + strand, within GFF3554 at 444.313 kb on - strand, within GFF3554 at 444.313 kb on - strand, within GFF3554 at 444.313 kb on - strand, within GFF3554 at 444.313 kb on - strand, within GFF3554 at 444.339 kb on + strand, within GFF3554 at 444.536 kb on + strand, within GFF3554 at 444.537 kb on + strand, within GFF3554 at 444.537 kb on + strand, within GFF3554 at 444.538 kb on - strand, within GFF3554 at 444.538 kb on - strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 445.177 kb on - strand at 445.287 kb on + strand at 445.288 kb on - strand at 445.288 kb on - strand at 445.504 kb on + strand at 445.505 kb on - strand at 445.505 kb on - strand at 445.746 kb on + strand at 445.747 kb on - strand at 445.806 kb on + strand at 445.807 kb on - strand at 446.088 kb on + strand, within GFF3555 at 446.146 kb on + strand, within GFF3555 at 446.146 kb on + strand, within GFF3555 at 446.182 kb on - strand, within GFF3555
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 443,021 + +0.3 443,022 - +0.8 443,022 - -1.1 443,135 + -0.6 443,135 + -0.0 443,135 + -1.0 443,135 + +0.1 443,135 + +0.1 443,136 - -1.3 443,136 - -0.0 443,240 + -0.2 443,240 + -0.9 443,240 + +1.0 443,240 + -1.0 443,241 - +0.8 443,243 - +0.8 443,281 - -0.1 443,468 - -0.0 443,468 - -0.1 443,470 + -1.0 443,470 + +0.4 443,470 + -0.6 443,470 + -0.8 443,470 + +0.0 443,471 - +0.2 443,471 - -0.2 443,471 - +0.2 443,492 - GFF3553 0.11 +0.3 443,492 - GFF3553 0.11 +0.2 443,492 - GFF3553 0.11 -0.3 443,494 - GFF3553 0.12 -0.6 443,773 + GFF3553 0.63 -0.5 443,773 + GFF3553 0.63 -0.6 443,773 + GFF3553 0.63 +0.4 443,774 - GFF3553 0.63 +0.2 443,774 - GFF3553 0.63 +0.2 443,774 - GFF3553 0.63 -0.2 443,774 - GFF3553 0.63 +0.4 444,005 + -0.5 444,058 - +0.6 444,312 + GFF3554 0.27 +0.2 444,312 + GFF3554 0.27 -0.9 444,312 + GFF3554 0.27 -0.0 444,312 + GFF3554 0.27 -0.0 444,313 - GFF3554 0.27 -0.4 444,313 - GFF3554 0.27 +0.4 444,313 - GFF3554 0.27 +0.2 444,313 - GFF3554 0.27 +0.3 444,339 + GFF3554 0.29 -0.4 444,536 + GFF3554 0.46 -1.2 444,537 + GFF3554 0.46 +0.1 444,537 + GFF3554 0.46 -0.1 444,538 - GFF3554 0.46 +0.3 444,538 - GFF3554 0.46 +0.1 444,981 + GFF3554 0.83 +0.5 444,981 + GFF3554 0.83 +0.4 444,981 + GFF3554 0.83 +0.2 444,981 + GFF3554 0.83 -0.7 444,981 + GFF3554 0.83 +0.1 444,981 + GFF3554 0.83 -0.6 444,981 + GFF3554 0.83 +0.9 444,981 + GFF3554 0.83 -0.3 444,981 + GFF3554 0.83 -1.4 444,981 + GFF3554 0.83 -0.4 444,981 + GFF3554 0.83 -0.0 444,981 + GFF3554 0.83 -1.4 444,982 - GFF3554 0.83 -0.0 444,982 - GFF3554 0.83 +2.7 444,982 - GFF3554 0.83 +0.3 444,982 - GFF3554 0.83 +0.8 444,982 - GFF3554 0.83 +0.2 444,982 - GFF3554 0.83 +0.1 444,982 - GFF3554 0.83 +0.3 444,982 - GFF3554 0.83 +0.5 444,982 - GFF3554 0.83 -1.1 444,982 - GFF3554 0.83 +0.5 445,177 - +0.7 445,287 + +0.1 445,288 - +0.0 445,288 - +1.0 445,504 + -0.0 445,505 - -0.6 445,505 - -1.1 445,746 + +0.2 445,747 - +0.4 445,806 + +0.3 445,807 - -0.2 446,088 + GFF3555 0.29 +0.9 446,146 + GFF3555 0.45 +1.1 446,146 + GFF3555 0.45 +2.2 446,182 - GFF3555 0.54 +0.3
Or see this region's nucleotide sequence