Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3069 and GFF3070 overlap by 4 nucleotides GFF3070 and GFF3071 overlap by 11 nucleotides GFF3071 and GFF3072 are separated by 20 nucleotides GFF3072 and GFF3073 overlap by 4 nucleotides GFF3073 and GFF3074 are separated by 43 nucleotides
GFF3069 - Methyltransferase (EC 2.1.1.-), at 149,121 to 150,449
GFF3069
GFF3070 - FIG00348512: hypothetical protein, at 150,446 to 150,880
GFF3070
GFF3071 - hypothetical protein, at 150,870 to 151,994
GFF3071
GFF3072 - hypothetical protein, at 152,015 to 152,404
GFF3072
GFF3073 - Integral membrane protein, at 152,401 to 152,865
GFF3073
GFF3074 - hypothetical protein, at 152,909 to 153,043
GFF3074
Position (kb) 150
151
152 Strain fitness (log2 ratio) -2
-1
0
1 at 150.262 kb on + strand, within GFF3069 at 150.285 kb on + strand, within GFF3069 at 150.609 kb on - strand, within GFF3070 at 150.881 kb on - strand at 151.122 kb on + strand, within GFF3071 at 151.122 kb on + strand, within GFF3071 at 151.123 kb on - strand, within GFF3071 at 151.123 kb on - strand, within GFF3071 at 151.123 kb on - strand, within GFF3071 at 151.308 kb on + strand, within GFF3071 at 151.308 kb on + strand, within GFF3071 at 151.309 kb on - strand, within GFF3071 at 151.309 kb on - strand, within GFF3071 at 151.309 kb on - strand, within GFF3071 at 151.309 kb on - strand, within GFF3071 at 151.452 kb on + strand, within GFF3071 at 151.453 kb on - strand, within GFF3071 at 151.554 kb on + strand, within GFF3071 at 151.554 kb on + strand, within GFF3071 at 151.554 kb on + strand, within GFF3071 at 151.555 kb on - strand, within GFF3071 at 151.689 kb on + strand, within GFF3071 at 151.689 kb on + strand, within GFF3071 at 151.690 kb on - strand, within GFF3071 at 151.690 kb on - strand, within GFF3071 at 151.713 kb on + strand, within GFF3071 at 151.713 kb on + strand, within GFF3071 at 151.713 kb on + strand, within GFF3071 at 151.714 kb on - strand, within GFF3071 at 151.714 kb on - strand, within GFF3071 at 151.714 kb on - strand, within GFF3071 at 151.857 kb on + strand, within GFF3071 at 151.857 kb on + strand, within GFF3071 at 151.857 kb on + strand, within GFF3071 at 151.858 kb on - strand, within GFF3071 at 151.858 kb on - strand, within GFF3071 at 151.932 kb on + strand at 151.933 kb on - strand at 151.933 kb on - strand at 152.148 kb on - strand, within GFF3072 at 152.324 kb on + strand, within GFF3072 at 152.325 kb on - strand, within GFF3072 at 152.668 kb on + strand, within GFF3073 at 152.669 kb on - strand, within GFF3073 at 152.776 kb on + strand, within GFF3073 at 152.777 kb on - strand, within GFF3073 at 152.867 kb on + strand at 152.872 kb on - strand at 152.910 kb on + strand at 152.988 kb on + strand, within GFF3074
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 150,262 + GFF3069 0.86 -0.6 150,285 + GFF3069 0.88 +0.1 150,609 - GFF3070 0.37 -0.7 150,881 - -0.4 151,122 + GFF3071 0.22 -0.1 151,122 + GFF3071 0.22 +0.1 151,123 - GFF3071 0.22 -0.5 151,123 - GFF3071 0.22 +0.2 151,123 - GFF3071 0.22 +1.1 151,308 + GFF3071 0.39 +0.1 151,308 + GFF3071 0.39 +0.1 151,309 - GFF3071 0.39 +0.6 151,309 - GFF3071 0.39 +0.1 151,309 - GFF3071 0.39 -0.4 151,309 - GFF3071 0.39 -0.3 151,452 + GFF3071 0.52 +0.6 151,453 - GFF3071 0.52 +1.6 151,554 + GFF3071 0.61 -0.3 151,554 + GFF3071 0.61 +0.0 151,554 + GFF3071 0.61 +1.4 151,555 - GFF3071 0.61 +0.2 151,689 + GFF3071 0.73 -0.1 151,689 + GFF3071 0.73 +0.2 151,690 - GFF3071 0.73 -0.2 151,690 - GFF3071 0.73 +0.6 151,713 + GFF3071 0.75 -0.5 151,713 + GFF3071 0.75 +0.6 151,713 + GFF3071 0.75 +0.1 151,714 - GFF3071 0.75 -0.3 151,714 - GFF3071 0.75 +0.1 151,714 - GFF3071 0.75 -0.1 151,857 + GFF3071 0.88 -0.1 151,857 + GFF3071 0.88 -0.7 151,857 + GFF3071 0.88 +0.2 151,858 - GFF3071 0.88 -0.3 151,858 - GFF3071 0.88 +0.1 151,932 + -0.7 151,933 - +0.0 151,933 - +0.8 152,148 - GFF3072 0.34 -2.5 152,324 + GFF3072 0.79 +0.9 152,325 - GFF3072 0.79 -0.2 152,668 + GFF3073 0.57 -0.7 152,669 - GFF3073 0.58 +0.0 152,776 + GFF3073 0.81 +0.5 152,777 - GFF3073 0.81 -0.4 152,867 + +0.4 152,872 - -0.5 152,910 + +0.9 152,988 + GFF3074 0.59 -1.7
Or see this region's nucleotide sequence