Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3031

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
107,185	+		GFF3029	0.55	+0.8
107,185	+		GFF3029	0.55	+1.6
107,186	-		GFF3029	0.55	-0.1
107,186	-		GFF3029	0.55	+0.0
107,186	-		GFF3029	0.55	-0.2
107,186	-		GFF3029	0.55	+1.2
107,410	+		GFF3029	0.78	+0.3
107,411	-		GFF3029	0.78	+0.8
107,441	-		GFF3029	0.81	-0.3
107,554	+				+0.2
107,718	-		GFF3030	0.20	-1.1
108,071	+				-0.3
108,072	-				+0.1
108,072	-				+0.0
108,285	+		GFF3031	0.14	+0.7
108,286	-		GFF3031	0.14	+1.0
108,286	-		GFF3031	0.14	+0.0
108,301	-		GFF3031	0.15	-0.1
108,301	-		GFF3031	0.15	+0.2
108,375	+		GFF3031	0.20	+0.1
108,523	-		GFF3031	0.29	+0.4
108,918	+		GFF3031	0.55	+0.2
108,918	+		GFF3031	0.55	-1.1
108,918	+		GFF3031	0.55	+2.1
108,919	-		GFF3031	0.56	-1.0
108,919	-		GFF3031	0.56	+0.3
108,919	-		GFF3031	0.56	-0.8
108,919	-		GFF3031	0.56	+0.2
108,919	-		GFF3031	0.56	+0.6
109,098	+		GFF3031	0.67	+0.0
109,098	+		GFF3031	0.67	+0.1
109,099	-		GFF3031	0.67	+0.2
109,590	+				+0.3
109,590	+				-0.1
109,590	+				+0.1
109,722	-				-0.1
110,278	-		GFF3032	0.76	-0.7