Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF258 and GFF259 are separated by 109 nucleotides GFF259 and GFF260 are separated by 40 nucleotides GFF260 and GFF261 are separated by 60 nucleotides GFF261 and GFF262 are separated by 78 nucleotides
GFF258 - Sulfite dehydrogenase cytochrome subunit SoxD, at 273,866 to 274,933
GFF258
GFF259 - Cytochrome c551/c552, at 275,043 to 275,381
GFF259
GFF260 - Sulfur oxidation protein SoxY, at 275,422 to 275,877
GFF260
GFF261 - Sulfur oxidation protein SoxZ, at 275,938 to 276,249
GFF261
GFF262 - sulfur oxidation protein SoxA, at 276,328 to 277,137
GFF262
Position (kb) 275
276 Strain fitness (log2 ratio) -2
-1
0
1 at 274.250 kb on + strand, within GFF258 at 274.250 kb on + strand, within GFF258 at 274.250 kb on + strand, within GFF258 at 274.251 kb on - strand, within GFF258 at 274.251 kb on - strand, within GFF258 at 274.251 kb on - strand, within GFF258 at 274.251 kb on - strand, within GFF258 at 274.307 kb on + strand, within GFF258 at 274.307 kb on + strand, within GFF258 at 274.307 kb on + strand, within GFF258 at 274.307 kb on + strand, within GFF258 at 274.308 kb on - strand, within GFF258 at 274.308 kb on - strand, within GFF258 at 274.308 kb on - strand, within GFF258 at 274.323 kb on - strand, within GFF258 at 274.323 kb on - strand, within GFF258 at 274.805 kb on + strand, within GFF258 at 274.805 kb on + strand, within GFF258 at 274.805 kb on + strand, within GFF258 at 274.806 kb on - strand, within GFF258 at 274.844 kb on + strand at 274.844 kb on + strand at 274.977 kb on + strand at 274.977 kb on + strand at 274.977 kb on + strand at 274.977 kb on + strand at 274.977 kb on + strand at 274.978 kb on - strand at 274.978 kb on - strand at 274.985 kb on + strand at 274.985 kb on + strand at 274.986 kb on - strand at 274.986 kb on - strand at 274.986 kb on - strand at 274.986 kb on - strand at 274.989 kb on + strand at 274.990 kb on - strand at 274.999 kb on + strand at 275.000 kb on - strand at 275.005 kb on + strand at 275.006 kb on - strand at 275.006 kb on - strand at 275.037 kb on + strand at 275.037 kb on + strand at 275.037 kb on + strand at 275.038 kb on - strand at 275.038 kb on - strand at 275.042 kb on + strand at 275.042 kb on + strand at 275.042 kb on + strand at 275.042 kb on + strand at 275.042 kb on + strand at 275.042 kb on + strand at 275.042 kb on + strand at 275.043 kb on - strand at 275.043 kb on - strand at 275.287 kb on - strand, within GFF259 at 275.287 kb on - strand, within GFF259 at 275.379 kb on + strand at 275.379 kb on + strand at 275.379 kb on + strand at 275.379 kb on + strand at 275.379 kb on + strand at 275.380 kb on - strand at 275.687 kb on - strand, within GFF260 at 275.828 kb on - strand, within GFF260 at 275.828 kb on - strand, within GFF260 at 275.922 kb on + strand at 275.923 kb on - strand at 275.923 kb on - strand at 276.207 kb on + strand, within GFF261 at 276.207 kb on + strand, within GFF261 at 276.207 kb on + strand, within GFF261 at 276.208 kb on - strand, within GFF261
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 274,250 + GFF258 0.36 +0.0 274,250 + GFF258 0.36 -0.2 274,250 + GFF258 0.36 -0.2 274,251 - GFF258 0.36 -0.2 274,251 - GFF258 0.36 +0.0 274,251 - GFF258 0.36 +0.8 274,251 - GFF258 0.36 -1.1 274,307 + GFF258 0.41 -1.0 274,307 + GFF258 0.41 -0.3 274,307 + GFF258 0.41 -0.6 274,307 + GFF258 0.41 -0.3 274,308 - GFF258 0.41 -0.1 274,308 - GFF258 0.41 +0.1 274,308 - GFF258 0.41 +0.6 274,323 - GFF258 0.43 -0.1 274,323 - GFF258 0.43 -0.1 274,805 + GFF258 0.88 +0.1 274,805 + GFF258 0.88 -0.7 274,805 + GFF258 0.88 -0.4 274,806 - GFF258 0.88 -0.0 274,844 + +0.2 274,844 + +0.5 274,977 + +0.9 274,977 + -0.1 274,977 + -0.6 274,977 + -0.5 274,977 + -0.2 274,978 - -0.2 274,978 - +1.1 274,985 + -0.4 274,985 + +0.2 274,986 - -0.8 274,986 - +0.4 274,986 - +0.3 274,986 - -0.2 274,989 + -0.9 274,990 - -0.1 274,999 + +0.3 275,000 - -0.3 275,005 + -0.6 275,006 - +0.8 275,006 - +0.5 275,037 + -0.6 275,037 + +0.6 275,037 + +0.0 275,038 - +0.1 275,038 - +0.6 275,042 + -0.0 275,042 + +0.2 275,042 + -0.2 275,042 + -0.3 275,042 + +0.1 275,042 + -1.5 275,042 + +0.2 275,043 - -1.5 275,043 - -0.9 275,287 - GFF259 0.72 -0.3 275,287 - GFF259 0.72 -0.1 275,379 + -1.1 275,379 + +0.6 275,379 + -0.1 275,379 + +0.7 275,379 + -0.0 275,380 - -0.0 275,687 - GFF260 0.58 -0.1 275,828 - GFF260 0.89 -1.8 275,828 - GFF260 0.89 +0.5 275,922 + -0.8 275,923 - +0.1 275,923 - -1.1 276,207 + GFF261 0.86 -0.3 276,207 + GFF261 0.86 +1.0 276,207 + GFF261 0.86 -0.2 276,208 - GFF261 0.87 +0.3
Or see this region's nucleotide sequence