Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2588 and GFF2589 are separated by 14 nucleotides GFF2589 and GFF2590 are separated by 111 nucleotides GFF2590 and GFF2591 are separated by 16 nucleotides
GFF2588 - Gentisate 1,2-dioxygenase (EC 1.13.11.4), at 182,232 to 183,290
GFF2588
GFF2589 - Putative n-hydroxybenzoate hydroxylase, at 183,305 to 184,507
GFF2589
GFF2590 - Transcriptional regulator, MarR family, at 184,619 to 185,095
GFF2590
GFF2591 - VfmD protein, at 185,112 to 185,996
GFF2591
Position (kb) 183
184
185 Strain fitness (log2 ratio) -1
0
1 at 182.362 kb on + strand, within GFF2588 at 182.449 kb on + strand, within GFF2588 at 182.449 kb on + strand, within GFF2588 at 182.450 kb on - strand, within GFF2588 at 182.560 kb on + strand, within GFF2588 at 182.561 kb on - strand, within GFF2588 at 182.561 kb on - strand, within GFF2588 at 182.561 kb on - strand, within GFF2588 at 182.653 kb on + strand, within GFF2588 at 182.761 kb on + strand, within GFF2588 at 182.762 kb on - strand, within GFF2588 at 182.762 kb on - strand, within GFF2588 at 182.776 kb on + strand, within GFF2588 at 182.776 kb on + strand, within GFF2588 at 182.779 kb on + strand, within GFF2588 at 182.780 kb on - strand, within GFF2588 at 182.780 kb on - strand, within GFF2588 at 182.780 kb on - strand, within GFF2588 at 182.780 kb on - strand, within GFF2588 at 183.013 kb on + strand, within GFF2588 at 183.013 kb on + strand, within GFF2588 at 183.014 kb on - strand, within GFF2588 at 183.014 kb on - strand, within GFF2588 at 183.014 kb on - strand, within GFF2588 at 183.342 kb on + strand at 183.363 kb on + strand at 183.364 kb on - strand at 183.499 kb on - strand, within GFF2589 at 183.597 kb on + strand, within GFF2589 at 183.597 kb on + strand, within GFF2589 at 183.597 kb on + strand, within GFF2589 at 183.597 kb on + strand, within GFF2589 at 183.598 kb on - strand, within GFF2589 at 183.598 kb on - strand, within GFF2589 at 183.598 kb on - strand, within GFF2589 at 183.748 kb on - strand, within GFF2589 at 183.828 kb on + strand, within GFF2589 at 183.946 kb on - strand, within GFF2589 at 184.287 kb on + strand, within GFF2589 at 184.288 kb on - strand, within GFF2589 at 184.570 kb on - strand at 185.093 kb on + strand at 185.093 kb on + strand at 185.093 kb on + strand at 185.093 kb on + strand at 185.093 kb on + strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.419 kb on + strand, within GFF2591 at 185.419 kb on - strand, within GFF2591 at 185.420 kb on - strand, within GFF2591
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 182,362 + GFF2588 0.12 -0.6 182,449 + GFF2588 0.20 +0.1 182,449 + GFF2588 0.20 +0.4 182,450 - GFF2588 0.21 -0.0 182,560 + GFF2588 0.31 +0.2 182,561 - GFF2588 0.31 -0.2 182,561 - GFF2588 0.31 -0.7 182,561 - GFF2588 0.31 -0.1 182,653 + GFF2588 0.40 +0.0 182,761 + GFF2588 0.50 +0.6 182,762 - GFF2588 0.50 -0.4 182,762 - GFF2588 0.50 -0.2 182,776 + GFF2588 0.51 -0.2 182,776 + GFF2588 0.51 +0.5 182,779 + GFF2588 0.52 -0.5 182,780 - GFF2588 0.52 -0.5 182,780 - GFF2588 0.52 -0.1 182,780 - GFF2588 0.52 -0.5 182,780 - GFF2588 0.52 +1.6 183,013 + GFF2588 0.74 -0.0 183,013 + GFF2588 0.74 +0.1 183,014 - GFF2588 0.74 -0.1 183,014 - GFF2588 0.74 -0.9 183,014 - GFF2588 0.74 -0.1 183,342 + -0.5 183,363 + -0.2 183,364 - +1.2 183,499 - GFF2589 0.16 -0.1 183,597 + GFF2589 0.24 +1.0 183,597 + GFF2589 0.24 -0.4 183,597 + GFF2589 0.24 -0.4 183,597 + GFF2589 0.24 +0.2 183,598 - GFF2589 0.24 +0.9 183,598 - GFF2589 0.24 +0.2 183,598 - GFF2589 0.24 +0.4 183,748 - GFF2589 0.37 -0.2 183,828 + GFF2589 0.43 +0.1 183,946 - GFF2589 0.53 +0.5 184,287 + GFF2589 0.82 +0.5 184,288 - GFF2589 0.82 -0.1 184,570 - -1.0 185,093 + -0.5 185,093 + -0.4 185,093 + +0.1 185,093 + +0.3 185,093 + -0.3 185,094 - +0.1 185,094 - +0.7 185,094 - -0.2 185,094 - -0.2 185,094 - -0.4 185,094 - +0.6 185,094 - +0.2 185,419 + GFF2591 0.35 -0.3 185,419 - GFF2591 0.35 +0.6 185,420 - GFF2591 0.35 +0.0
Or see this region's nucleotide sequence