Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2424

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2423 and GFF2424 are separated by 87 nucleotidesGFF2424 and GFF2425 are separated by 66 nucleotidesGFF2425 and GFF2426 are separated by 122 nucleotides GFF2423 - Transcriptional activator of maltose regulon, MalT, at 338 to 2,983 GFF2423 GFF2424 - Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, at 3,071 to 4,816 GFF2424 GFF2425 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 4,883 to 5,626 GFF2425 GFF2426 - Sugar phosphate isomerases/epimerases, at 5,749 to 6,501 GFF2426 Position (kb) 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2at 2.111 kb on + strand, within GFF2423at 2.111 kb on + strand, within GFF2423at 2.112 kb on - strand, within GFF2423at 2.228 kb on + strand, within GFF2423at 2.228 kb on + strand, within GFF2423at 2.229 kb on - strand, within GFF2423at 2.229 kb on - strand, within GFF2423at 2.229 kb on - strand, within GFF2423at 2.451 kb on + strand, within GFF2423at 2.452 kb on - strand, within GFF2423at 2.452 kb on - strand, within GFF2423at 2.645 kb on + strand, within GFF2423at 2.646 kb on - strand, within GFF2423at 2.698 kb on + strand, within GFF2423at 2.699 kb on - strand, within GFF2423at 2.699 kb on - strand, within GFF2423at 2.832 kb on + strandat 2.833 kb on - strandat 2.981 kb on + strandat 2.981 kb on + strandat 3.012 kb on + strandat 3.342 kb on - strand, within GFF2424at 3.342 kb on - strand, within GFF2424at 3.345 kb on - strand, within GFF2424at 3.508 kb on + strand, within GFF2424at 3.509 kb on + strand, within GFF2424at 3.510 kb on - strand, within GFF2424at 3.575 kb on - strand, within GFF2424at 3.695 kb on + strand, within GFF2424at 3.696 kb on - strand, within GFF2424at 3.825 kb on + strand, within GFF2424at 4.196 kb on + strand, within GFF2424at 4.199 kb on + strand, within GFF2424at 4.199 kb on + strand, within GFF2424at 4.199 kb on + strand, within GFF2424at 4.199 kb on + strand, within GFF2424at 4.199 kb on + strand, within GFF2424at 4.199 kb on + strand, within GFF2424at 4.200 kb on - strand, within GFF2424at 4.200 kb on - strand, within GFF2424at 4.205 kb on + strand, within GFF2424at 4.205 kb on + strand, within GFF2424at 4.205 kb on + strand, within GFF2424at 4.206 kb on - strand, within GFF2424at 4.206 kb on - strand, within GFF2424at 4.350 kb on - strand, within GFF2424at 4.366 kb on + strand, within GFF2424at 4.367 kb on - strand, within GFF2424at 4.430 kb on + strand, within GFF2424at 4.430 kb on + strand, within GFF2424at 4.431 kb on - strand, within GFF2424at 4.431 kb on - strand, within GFF2424at 4.535 kb on - strand, within GFF2424at 4.535 kb on - strand, within GFF2424at 4.535 kb on - strand, within GFF2424at 4.535 kb on - strand, within GFF2424at 4.535 kb on - strand, within GFF2424at 4.535 kb on - strand, within GFF2424at 4.562 kb on + strand, within GFF2424at 4.754 kb on + strandat 4.755 kb on - strandat 4.828 kb on - strandat 4.828 kb on - strandat 5.183 kb on + strand, within GFF2425at 5.183 kb on + strand, within GFF2425at 5.184 kb on - strand, within GFF2425at 5.184 kb on - strand, within GFF2425at 5.235 kb on + strand, within GFF2425at 5.342 kb on + strand, within GFF2425at 5.342 kb on + strand, within GFF2425at 5.354 kb on - strand, within GFF2425at 5.621 kb on + strandat 5.621 kb on + strandat 5.622 kb on - strandat 5.622 kb on - strandat 5.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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2,111 + GFF2423 0.67 -0.2
2,111 + GFF2423 0.67 -0.4
2,112 - GFF2423 0.67 -0.5
2,228 + GFF2423 0.71 -0.1
2,228 + GFF2423 0.71 -0.2
2,229 - GFF2423 0.71 +0.8
2,229 - GFF2423 0.71 -0.5
2,229 - GFF2423 0.71 +1.3
2,451 + GFF2423 0.80 -0.3
2,452 - GFF2423 0.80 -0.2
2,452 - GFF2423 0.80 -0.7
2,645 + GFF2423 0.87 +0.1
2,646 - GFF2423 0.87 +0.3
2,698 + GFF2423 0.89 +0.3
2,699 - GFF2423 0.89 -0.3
2,699 - GFF2423 0.89 -0.4
2,832 + -0.3
2,833 - +0.2
2,981 + +0.6
2,981 + -0.2
3,012 + -1.1
3,342 - GFF2424 0.16 +0.8
3,342 - GFF2424 0.16 -0.6
3,345 - GFF2424 0.16 +0.3
3,508 + GFF2424 0.25 +0.6
3,509 + GFF2424 0.25 -0.0
3,510 - GFF2424 0.25 -0.6
3,575 - GFF2424 0.29 +0.2
3,695 + GFF2424 0.36 -0.1
3,696 - GFF2424 0.36 +0.2
3,825 + GFF2424 0.43 +0.0
4,196 + GFF2424 0.64 -1.0
4,199 + GFF2424 0.65 +1.8
4,199 + GFF2424 0.65 +0.2
4,199 + GFF2424 0.65 +0.5
4,199 + GFF2424 0.65 -1.9
4,199 + GFF2424 0.65 -0.2
4,199 + GFF2424 0.65 +1.1
4,200 - GFF2424 0.65 -0.5
4,200 - GFF2424 0.65 +1.4
4,205 + GFF2424 0.65 +0.3
4,205 + GFF2424 0.65 -0.1
4,205 + GFF2424 0.65 +0.3
4,206 - GFF2424 0.65 +0.1
4,206 - GFF2424 0.65 -0.4
4,350 - GFF2424 0.73 -0.3
4,366 + GFF2424 0.74 -0.2
4,367 - GFF2424 0.74 -0.7
4,430 + GFF2424 0.78 +0.3
4,430 + GFF2424 0.78 +0.3
4,431 - GFF2424 0.78 +0.0
4,431 - GFF2424 0.78 +0.6
4,535 - GFF2424 0.84 -0.6
4,535 - GFF2424 0.84 +1.2
4,535 - GFF2424 0.84 +0.4
4,535 - GFF2424 0.84 +0.5
4,535 - GFF2424 0.84 -0.5
4,535 - GFF2424 0.84 -0.4
4,562 + GFF2424 0.85 +0.2
4,754 + -0.6
4,755 - +0.9
4,828 - +0.0
4,828 - -0.7
5,183 + GFF2425 0.40 +0.4
5,183 + GFF2425 0.40 -0.7
5,184 - GFF2425 0.40 -0.5
5,184 - GFF2425 0.40 +0.1
5,235 + GFF2425 0.47 +0.6
5,342 + GFF2425 0.62 -0.1
5,342 + GFF2425 0.62 -0.0
5,354 - GFF2425 0.63 +0.6
5,621 + +0.8
5,621 + -1.0
5,622 - +0.5
5,622 - -0.3
5,622 - +0.1

Or see this region's nucleotide sequence