Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2336

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
1,219,891	+				-0.2
1,219,892	-				+1.0
1,219,892	-				-0.0
1,219,954	+				-1.0
1,219,955	-				+0.3
1,219,955	-				+0.5
1,219,971	+				+0.0
1,219,971	+				-0.2
1,219,971	-				-0.7
1,219,972	-				-0.2
1,219,972	-				-0.3
1,219,972	-				+1.3
1,219,972	-				-0.7
1,220,059	-		GFF2335	0.16	+0.1
1,220,059	-		GFF2335	0.16	-0.2
1,220,059	-		GFF2335	0.16	-0.1
1,220,110	+		GFF2335	0.22	+0.3
1,220,110	+		GFF2335	0.22	+0.1
1,220,111	-		GFF2335	0.22	-0.4
1,220,111	-		GFF2335	0.22	+0.1
1,220,181	+		GFF2335	0.30	-1.9
1,220,182	-		GFF2335	0.30	-0.2
1,220,185	+		GFF2335	0.30	+0.6
1,220,185	+		GFF2335	0.30	+0.7
1,220,185	+		GFF2335	0.30	-0.4
1,220,185	+		GFF2335	0.30	+0.0
1,220,185	+		GFF2335	0.30	+0.0
1,220,185	+		GFF2335	0.30	+0.5
1,220,185	+		GFF2335	0.30	-0.2
1,220,186	-		GFF2335	0.30	+0.9
1,220,186	-		GFF2335	0.30	-0.2
1,220,251	+		GFF2335	0.37	+0.6
1,220,251	+		GFF2335	0.37	+1.2
1,220,251	+		GFF2335	0.37	-0.3
1,220,251	+		GFF2335	0.37	-1.2
1,220,252	-		GFF2335	0.37	+0.3
1,220,252	-		GFF2335	0.37	-1.4
1,220,277	-		GFF2335	0.40	+0.4
1,220,324	+		GFF2335	0.45	+0.4
1,220,372	+		GFF2335	0.51	+0.9
1,220,372	+		GFF2335	0.51	+1.4
1,220,372	+		GFF2335	0.51	+0.4
1,220,373	-		GFF2335	0.51	-1.4
1,220,373	-		GFF2335	0.51	-1.0
1,220,373	-		GFF2335	0.51	-1.8
1,220,376	+		GFF2335	0.51	+0.1
1,220,376	+		GFF2335	0.51	-0.9
1,220,376	+		GFF2335	0.51	+0.3
1,220,376	+		GFF2335	0.51	+0.2
1,220,377	-		GFF2335	0.51	+0.5
1,220,377	-		GFF2335	0.51	-0.4
1,220,377	-		GFF2335	0.51	-0.6
1,220,399	+		GFF2335	0.54	+0.5
1,220,399	+		GFF2335	0.54	+0.1
1,220,399	+		GFF2335	0.54	+0.5
1,220,400	-		GFF2335	0.54	-0.8
1,220,401	+		GFF2335	0.54	-0.1
1,220,401	+		GFF2335	0.54	-0.0
1,220,401	+		GFF2335	0.54	+0.3
1,220,401	+		GFF2335	0.54	-1.3
1,220,402	-		GFF2335	0.54	+0.7
1,220,402	-		GFF2335	0.54	-0.4
1,220,402	-		GFF2335	0.54	-0.1
1,220,405	+		GFF2335	0.54	+0.4
1,220,406	-		GFF2335	0.54	-0.0
1,220,406	-		GFF2335	0.54	+0.5
1,220,412	+		GFF2335	0.55	-1.3
1,220,413	-		GFF2335	0.55	-0.1
1,220,413	-		GFF2335	0.55	-0.6
1,220,413	-		GFF2335	0.55	+0.7
1,220,597	+		GFF2335	0.76	+0.2
1,220,597	+		GFF2335	0.76	+0.2
1,220,636	-		GFF2335	0.80	-1.1
1,220,636	-		GFF2335	0.80	+0.4
1,220,694	+		GFF2335	0.86	+1.2
1,220,694	+		GFF2335	0.86	+0.5
1,220,695	-		GFF2335	0.86	-0.0
1,220,695	-		GFF2335	0.86	-0.0
1,220,695	-		GFF2335	0.86	+1.3
1,220,859	+				-0.2
1,220,860	-				+0.2
1,220,860	-				-0.5
1,220,887	+				+1.2
1,220,888	+				+0.8
1,220,888	+				+1.4
1,220,888	+				+0.3
1,220,889	-				-0.6
1,220,889	-				-0.2
1,220,889	-				+0.0
1,220,918	+				+0.7
1,220,918	+				+0.2
1,220,918	+				+0.3
1,220,919	-				-1.0
1,220,919	-				+0.5
1,220,919	-				-0.1
1,220,919	-				+0.2
1,220,955	+				-0.5
1,220,955	+				+0.5
1,220,956	-				-0.1
1,220,956	-				-1.9
1,220,958	+				+0.9
1,220,958	+				-0.2
1,220,958	+				+0.6
1,220,959	-				+0.7
1,220,959	-				-0.2
1,220,959	-				-0.1
1,221,022	+		GFF2336	0.13	-1.7
1,221,022	+		GFF2336	0.13	+0.2
1,221,023	-		GFF2336	0.13	-1.1
1,221,023	-		GFF2336	0.13	+0.1
1,221,023	-		GFF2336	0.13	+0.0
1,221,023	-		GFF2336	0.13	-0.6
1,221,083	+		GFF2336	0.17	+0.3
1,221,110	+		GFF2336	0.19	-0.1
1,221,110	+		GFF2336	0.19	+0.6
1,221,111	-		GFF2336	0.19	-0.2
1,221,113	+		GFF2336	0.19	-1.0
1,221,147	-		GFF2336	0.21	+0.4
1,221,185	+		GFF2336	0.24	+0.2
1,221,185	+		GFF2336	0.24	-0.4
1,221,185	+		GFF2336	0.24	-0.6
1,221,185	+		GFF2336	0.24	-0.7
1,221,185	+		GFF2336	0.24	+0.1
1,221,185	+		GFF2336	0.24	-1.0
1,221,185	+		GFF2336	0.24	+0.6
1,221,186	-		GFF2336	0.24	-0.4
1,221,186	-		GFF2336	0.24	+0.4
1,221,186	-		GFF2336	0.24	-0.4
1,221,186	-		GFF2336	0.24	-0.8
1,221,186	-		GFF2336	0.24	+0.0
1,221,213	-		GFF2336	0.26	-0.8
1,221,213	-		GFF2336	0.26	+0.2
1,221,231	+		GFF2336	0.27	+0.9
1,221,232	-		GFF2336	0.27	-0.5
1,221,260	+		GFF2336	0.29	-0.1
1,221,260	+		GFF2336	0.29	-1.2
1,221,260	+		GFF2336	0.29	+0.1
1,221,261	-		GFF2336	0.29	-0.3
1,221,271	-		GFF2336	0.29	-0.1
1,221,297	+		GFF2336	0.31	-0.4
1,221,303	+		GFF2336	0.31	-0.1
1,221,304	-		GFF2336	0.31	+0.5
1,221,305	+		GFF2336	0.31	+0.7
1,221,305	+		GFF2336	0.31	+0.3
1,221,305	+		GFF2336	0.31	+0.1
1,221,418	+		GFF2336	0.39	+0.4
1,221,448	+		GFF2336	0.41	-0.7
1,221,448	+		GFF2336	0.41	+0.2
1,221,450	+		GFF2336	0.41	+0.4
1,221,450	+		GFF2336	0.41	-0.3
1,221,450	+		GFF2336	0.41	-0.3
1,221,451	-		GFF2336	0.41	-0.1
1,221,451	-		GFF2336	0.41	+0.6
1,221,470	+		GFF2336	0.42	+0.4
1,221,471	-		GFF2336	0.42	+0.5
1,221,471	-		GFF2336	0.42	-0.4
1,221,471	-		GFF2336	0.42	+0.6
1,221,527	+		GFF2336	0.46	+0.3
1,221,527	+		GFF2336	0.46	+0.0
1,221,527	+		GFF2336	0.46	+0.3
1,221,527	+		GFF2336	0.46	+0.5
1,221,528	-		GFF2336	0.46	+0.4
1,221,528	-		GFF2336	0.46	+0.8
1,221,559	-		GFF2336	0.48	+0.9
1,221,559	-		GFF2336	0.48	+0.0
1,221,559	-		GFF2336	0.48	+0.7
1,221,576	+		GFF2336	0.49	+0.2
1,221,577	-		GFF2336	0.49	-0.2
1,221,577	-		GFF2336	0.49	+0.3
1,221,577	-		GFF2336	0.49	+0.4
1,221,577	-		GFF2336	0.49	-0.1
1,221,664	+		GFF2336	0.54	+0.0
1,221,695	+		GFF2336	0.56	+0.5
1,221,695	+		GFF2336	0.56	+0.6
1,221,695	+		GFF2336	0.56	-0.5
1,221,696	-		GFF2336	0.56	-0.2
1,221,696	-		GFF2336	0.56	-2.3
1,221,696	-		GFF2336	0.56	+0.1
1,221,708	+		GFF2336	0.57	-1.1
1,221,708	+		GFF2336	0.57	-0.3
1,221,708	+		GFF2336	0.57	+0.6
1,221,709	-		GFF2336	0.57	-0.7
1,221,709	-		GFF2336	0.57	+0.3
1,221,709	-		GFF2336	0.57	+0.0
1,221,709	-		GFF2336	0.57	+0.8
1,221,709	-		GFF2336	0.57	-0.4
1,221,718	+		GFF2336	0.58	-2.0
1,221,812	+		GFF2336	0.64	-0.4
1,221,813	-		GFF2336	0.64	+0.1
1,221,850	-		GFF2336	0.66	+0.7
1,221,850	-		GFF2336	0.66	+1.0
1,221,933	+		GFF2336	0.72	-0.7
1,221,933	+		GFF2336	0.72	+1.6
1,221,933	+		GFF2336	0.72	-1.2
1,221,933	+		GFF2336	0.72	-0.4
1,221,934	-		GFF2336	0.72	+0.0
1,221,970	+		GFF2336	0.74	+1.1
1,221,971	-		GFF2336	0.74	+0.1
1,222,039	+		GFF2336	0.78	+1.2
1,222,040	-		GFF2336	0.79	+0.6
1,222,040	-		GFF2336	0.79	-0.9
1,222,047	+		GFF2336	0.79	-0.6
1,222,047	+		GFF2336	0.79	+0.0
1,222,047	+		GFF2336	0.79	+0.6
1,222,047	+		GFF2336	0.79	+0.1
1,222,048	-		GFF2336	0.79	+0.8
1,222,048	-		GFF2336	0.79	+1.0
1,222,048	-		GFF2336	0.79	+1.0
1,222,053	+		GFF2336	0.79	-0.1
1,222,054	-		GFF2336	0.79	+1.2
1,222,057	-		GFF2336	0.80	+1.9
1,222,104	+		GFF2336	0.83	-0.3
1,222,104	+		GFF2336	0.83	-1.8
1,222,104	+		GFF2336	0.83	+0.0
1,222,181	-		GFF2336	0.88	+0.0
1,222,223	+				+0.9
1,222,223	+				-0.1
1,222,223	+				-0.4
1,222,223	+				-0.8
1,222,224	-				+0.7
1,222,248	+				+0.2
1,222,249	-				-0.5
1,222,284	+				-0.2
1,222,301	-				-1.0
1,222,301	-				+0.7
1,222,301	-				+0.0
1,222,314	+				+1.0
1,222,314	+				+0.7
1,222,314	+				+0.4
1,222,314	+				-1.6
1,222,503	+				-0.1
1,222,503	+				+0.3
1,222,503	+				+0.0
1,222,503	+				-0.1
1,222,504	-				-0.4
1,222,504	-				+0.8
1,222,504	-				+0.1
1,222,504	-				+1.9
1,222,512	+				-0.1
1,222,513	-				-0.6
1,222,597	-				+0.9
1,222,597	-				+0.7
1,222,597	-				+0.1
1,222,605	+				+0.3
1,222,606	-				+0.9
1,222,606	-				-0.1
1,222,649	+				-0.4
1,222,649	+				+0.6
1,222,649	+				-0.3
1,222,650	-				+0.3
1,222,653	+				+0.4
1,222,654	-				+0.6
1,222,765	+				+0.7
1,222,765	+				+1.1
1,222,766	-				+0.3
1,222,766	-				-1.0
1,222,766	-				+1.0
1,222,798	+				+0.2
1,222,799	-				+0.0
1,222,811	+				-0.1
1,222,812	-				-0.1
1,222,927	+				+0.9
1,222,927	+				-0.3
1,222,927	+				+0.9
1,222,928	-				-0.0
1,222,937	+				+0.7
1,223,014	-				-0.1
1,223,014	-				+0.3
1,223,014	-				+0.6
1,223,046	-				+0.2
1,223,046	-				-0.4
1,223,046	-				+0.0
1,223,115	+				-2.1
1,223,115	+				+0.3
1,223,194	+				+0.3
1,223,195	-				+0.7
1,223,203	+				+1.1
1,223,204	-				-1.5
1,223,246	-				+0.6
1,223,246	-				-0.7
1,223,276	+				+0.5
1,223,277	-				+1.3
1,223,277	-				-0.6