Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2134 and GFF2135 are separated by 16 nucleotides GFF2135 and GFF2136 overlap by 4 nucleotides
GFF2134 - TcuB: works with TcuA to oxidize tricarballylate to cis-aconitate, at 1,023,452 to 1,024,624
GFF2134
GFF2135 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 1,024,641 to 1,026,257
GFF2135
GFF2136 - aryldialkylphosphatase, at 1,026,254 to 1,027,444
GFF2136
Position (kb) 1024
1025
1026
1027 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1023.693 kb on - strand, within GFF2134 at 1023.759 kb on - strand, within GFF2134 at 1023.797 kb on + strand, within GFF2134 at 1023.914 kb on + strand, within GFF2134 at 1023.914 kb on + strand, within GFF2134 at 1023.914 kb on + strand, within GFF2134 at 1024.094 kb on + strand, within GFF2134 at 1024.095 kb on - strand, within GFF2134 at 1024.181 kb on + strand, within GFF2134 at 1024.182 kb on - strand, within GFF2134 at 1024.182 kb on - strand, within GFF2134 at 1024.226 kb on + strand, within GFF2134 at 1024.226 kb on + strand, within GFF2134 at 1024.232 kb on + strand, within GFF2134 at 1024.232 kb on + strand, within GFF2134 at 1024.232 kb on + strand, within GFF2134 at 1024.232 kb on + strand, within GFF2134 at 1024.233 kb on - strand, within GFF2134 at 1024.233 kb on - strand, within GFF2134 at 1024.233 kb on - strand, within GFF2134 at 1024.747 kb on + strand at 1025.134 kb on + strand, within GFF2135 at 1025.134 kb on + strand, within GFF2135 at 1025.134 kb on + strand, within GFF2135 at 1025.134 kb on + strand, within GFF2135 at 1025.134 kb on + strand, within GFF2135 at 1025.134 kb on + strand, within GFF2135 at 1025.135 kb on - strand, within GFF2135 at 1025.188 kb on + strand, within GFF2135 at 1025.189 kb on - strand, within GFF2135 at 1025.189 kb on - strand, within GFF2135 at 1025.189 kb on - strand, within GFF2135 at 1025.492 kb on - strand, within GFF2135 at 1025.617 kb on + strand, within GFF2135 at 1025.968 kb on + strand, within GFF2135 at 1026.489 kb on + strand, within GFF2136 at 1026.573 kb on + strand, within GFF2136 at 1026.576 kb on + strand, within GFF2136 at 1026.577 kb on - strand, within GFF2136 at 1026.577 kb on - strand, within GFF2136 at 1026.696 kb on + strand, within GFF2136 at 1026.876 kb on + strand, within GFF2136 at 1026.876 kb on + strand, within GFF2136 at 1026.876 kb on + strand, within GFF2136 at 1027.066 kb on - strand, within GFF2136 at 1027.066 kb on - strand, within GFF2136
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 1,023,693 - GFF2134 0.21 -0.1 1,023,759 - GFF2134 0.26 +0.6 1,023,797 + GFF2134 0.29 +0.2 1,023,914 + GFF2134 0.39 -0.4 1,023,914 + GFF2134 0.39 -1.0 1,023,914 + GFF2134 0.39 -0.5 1,024,094 + GFF2134 0.55 -0.1 1,024,095 - GFF2134 0.55 +0.4 1,024,181 + GFF2134 0.62 -0.4 1,024,182 - GFF2134 0.62 +0.6 1,024,182 - GFF2134 0.62 -0.0 1,024,226 + GFF2134 0.66 -0.1 1,024,226 + GFF2134 0.66 +0.4 1,024,232 + GFF2134 0.66 -0.4 1,024,232 + GFF2134 0.66 -0.4 1,024,232 + GFF2134 0.66 -0.7 1,024,232 + GFF2134 0.66 +0.0 1,024,233 - GFF2134 0.67 -0.4 1,024,233 - GFF2134 0.67 -0.4 1,024,233 - GFF2134 0.67 +0.7 1,024,747 + +0.2 1,025,134 + GFF2135 0.30 +0.3 1,025,134 + GFF2135 0.30 -0.0 1,025,134 + GFF2135 0.30 -1.1 1,025,134 + GFF2135 0.30 +1.3 1,025,134 + GFF2135 0.30 -0.2 1,025,134 + GFF2135 0.30 +1.1 1,025,135 - GFF2135 0.31 -0.3 1,025,188 + GFF2135 0.34 +0.5 1,025,189 - GFF2135 0.34 -3.1 1,025,189 - GFF2135 0.34 +0.4 1,025,189 - GFF2135 0.34 -1.2 1,025,492 - GFF2135 0.53 +0.6 1,025,617 + GFF2135 0.60 +0.2 1,025,968 + GFF2135 0.82 +0.4 1,026,489 + GFF2136 0.20 +1.3 1,026,573 + GFF2136 0.27 +0.4 1,026,576 + GFF2136 0.27 -0.6 1,026,577 - GFF2136 0.27 -0.4 1,026,577 - GFF2136 0.27 -1.6 1,026,696 + GFF2136 0.37 -0.3 1,026,876 + GFF2136 0.52 +1.2 1,026,876 + GFF2136 0.52 -0.3 1,026,876 + GFF2136 0.52 -0.9 1,027,066 - GFF2136 0.68 +0.2 1,027,066 - GFF2136 0.68 +0.3
Or see this region's nucleotide sequence