Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2108 and GFF2109 are separated by 194 nucleotides GFF2109 and GFF2110 overlap by 1 nucleotides GFF2110 and GFF2111 are separated by 9 nucleotides
GFF2108 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 995,799 to 996,956
GFF2108
GFF2109 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 997,151 to 999,349
GFF2109
GFF2110 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 999,349 to 1,000,131
GFF2110
GFF2111 - Enoyl-CoA hydratase (EC 4.2.1.17), at 1,000,141 to 1,000,956
GFF2111
Position (kb) 997
998
999
1000 Strain fitness (log2 ratio) -1
0
1
2 at 996.451 kb on + strand, within GFF2108 at 996.452 kb on - strand, within GFF2108 at 996.943 kb on + strand at 996.943 kb on + strand at 996.944 kb on - strand at 996.944 kb on - strand at 996.944 kb on - strand at 996.944 kb on - strand at 996.944 kb on - strand at 996.944 kb on - strand at 996.944 kb on - strand at 997.150 kb on + strand at 997.154 kb on + strand at 997.154 kb on + strand at 997.154 kb on + strand at 997.155 kb on - strand at 997.155 kb on - strand at 997.155 kb on - strand at 997.155 kb on - strand at 998.705 kb on + strand, within GFF2109 at 998.705 kb on + strand, within GFF2109 at 998.747 kb on + strand, within GFF2109 at 998.748 kb on - strand, within GFF2109 at 998.954 kb on + strand, within GFF2109 at 999.210 kb on - strand at 999.210 kb on - strand at 999.278 kb on + strand at 999.279 kb on - strand at 999.844 kb on + strand, within GFF2110
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 996,451 + GFF2108 0.56 -0.1 996,452 - GFF2108 0.56 +1.1 996,943 + -0.5 996,943 + +0.7 996,944 - -0.7 996,944 - +0.1 996,944 - -0.4 996,944 - +0.4 996,944 - +0.5 996,944 - -0.6 996,944 - +0.2 997,150 + -1.2 997,154 + -0.5 997,154 + -0.6 997,154 + -1.6 997,155 - -0.2 997,155 - -0.2 997,155 - +2.0 997,155 - -0.6 998,705 + GFF2109 0.71 -0.7 998,705 + GFF2109 0.71 -1.0 998,747 + GFF2109 0.73 -0.8 998,748 - GFF2109 0.73 -0.2 998,954 + GFF2109 0.82 -0.2 999,210 - +0.1 999,210 - +0.1 999,278 + -0.6 999,279 - -0.0 999,844 + GFF2110 0.63 +0.9
Or see this region's nucleotide sequence