Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2035

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2034 and GFF2035 are separated by 99 nucleotidesGFF2035 and GFF2036 are separated by 146 nucleotides GFF2034 - Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2), at 914,298 to 915,392 GFF2034 GFF2035 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 915,492 to 916,661 GFF2035 GFF2036 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 916,808 to 918,247 GFF2036 Position (kb) 915 916 917Strain fitness (log2 ratio) -2 -1 0 1 2 3at 914.716 kb on + strand, within GFF2034at 914.716 kb on + strand, within GFF2034at 914.716 kb on + strand, within GFF2034at 914.716 kb on + strand, within GFF2034at 914.716 kb on + strand, within GFF2034at 914.716 kb on + strand, within GFF2034at 914.716 kb on + strand, within GFF2034at 914.716 kb on + strand, within GFF2034at 914.716 kb on + strand, within GFF2034at 914.716 kb on + strand, within GFF2034at 914.716 kb on + strand, within GFF2034at 914.716 kb on + strand, within GFF2034at 914.716 kb on + strand, within GFF2034at 914.717 kb on - strand, within GFF2034at 914.717 kb on - strand, within GFF2034at 914.717 kb on - strand, within GFF2034at 914.717 kb on - strand, within GFF2034at 914.717 kb on - strand, within GFF2034at 914.717 kb on - strand, within GFF2034at 914.717 kb on - strand, within GFF2034at 914.717 kb on - strand, within GFF2034at 915.130 kb on + strand, within GFF2034at 915.130 kb on + strand, within GFF2034at 915.163 kb on + strand, within GFF2034at 915.163 kb on + strand, within GFF2034at 915.468 kb on - strandat 915.493 kb on + strandat 915.493 kb on + strandat 915.493 kb on + strandat 915.493 kb on + strandat 915.493 kb on + strandat 915.493 kb on + strandat 915.493 kb on + strandat 915.494 kb on - strandat 915.494 kb on - strandat 915.494 kb on - strandat 915.494 kb on - strandat 915.494 kb on - strandat 915.494 kb on - strandat 915.494 kb on - strandat 915.494 kb on - strandat 915.494 kb on - strandat 915.494 kb on - strandat 915.517 kb on + strandat 915.517 kb on + strandat 915.517 kb on + strandat 915.518 kb on - strandat 915.518 kb on - strandat 915.518 kb on - strandat 915.518 kb on - strandat 915.518 kb on - strandat 915.518 kb on - strandat 915.518 kb on - strandat 915.518 kb on - strandat 915.664 kb on + strand, within GFF2035at 915.665 kb on - strand, within GFF2035at 915.665 kb on - strand, within GFF2035at 915.665 kb on - strand, within GFF2035at 915.665 kb on - strand, within GFF2035at 915.665 kb on - strand, within GFF2035at 915.709 kb on + strand, within GFF2035at 915.709 kb on + strand, within GFF2035at 915.709 kb on + strand, within GFF2035at 915.710 kb on - strand, within GFF2035at 915.710 kb on - strand, within GFF2035at 915.710 kb on - strand, within GFF2035at 915.778 kb on - strand, within GFF2035at 916.003 kb on + strand, within GFF2035at 916.003 kb on + strand, within GFF2035at 916.004 kb on - strand, within GFF2035at 916.021 kb on + strand, within GFF2035at 916.021 kb on + strand, within GFF2035at 916.021 kb on + strand, within GFF2035at 916.021 kb on + strand, within GFF2035at 916.022 kb on - strand, within GFF2035at 916.022 kb on - strand, within GFF2035at 916.022 kb on - strand, within GFF2035at 916.022 kb on - strand, within GFF2035at 916.022 kb on - strand, within GFF2035at 916.022 kb on - strand, within GFF2035at 916.063 kb on + strand, within GFF2035at 916.063 kb on + strand, within GFF2035at 916.063 kb on + strand, within GFF2035at 916.064 kb on - strand, within GFF2035at 916.095 kb on + strand, within GFF2035at 916.096 kb on + strand, within GFF2035at 916.097 kb on - strand, within GFF2035at 916.097 kb on - strand, within GFF2035at 916.276 kb on + strand, within GFF2035at 916.276 kb on + strand, within GFF2035at 916.276 kb on + strand, within GFF2035at 916.276 kb on + strand, within GFF2035at 916.277 kb on - strand, within GFF2035at 916.277 kb on - strand, within GFF2035at 916.277 kb on - strand, within GFF2035at 916.309 kb on + strand, within GFF2035at 916.310 kb on - strand, within GFF2035at 916.310 kb on - strand, within GFF2035at 916.310 kb on - strand, within GFF2035at 916.366 kb on + strand, within GFF2035at 916.366 kb on + strand, within GFF2035at 916.366 kb on + strand, within GFF2035at 916.367 kb on - strand, within GFF2035at 916.367 kb on - strand, within GFF2035at 916.367 kb on - strand, within GFF2035at 916.426 kb on + strand, within GFF2035at 916.426 kb on + strand, within GFF2035at 916.426 kb on + strand, within GFF2035at 916.426 kb on + strand, within GFF2035at 916.426 kb on + strand, within GFF2035at 916.426 kb on + strand, within GFF2035at 916.426 kb on + strand, within GFF2035at 916.426 kb on + strand, within GFF2035at 916.426 kb on + strand, within GFF2035at 916.426 kb on + strand, within GFF2035at 916.426 kb on + strand, within GFF2035at 916.426 kb on + strand, within GFF2035at 916.427 kb on - strand, within GFF2035at 916.427 kb on - strand, within GFF2035at 916.427 kb on - strand, within GFF2035at 916.427 kb on - strand, within GFF2035at 916.427 kb on - strand, within GFF2035at 916.427 kb on - strand, within GFF2035at 916.427 kb on - strand, within GFF2035at 916.427 kb on - strand, within GFF2035at 916.444 kb on + strand, within GFF2035at 916.445 kb on - strand, within GFF2035at 916.445 kb on - strand, within GFF2035at 916.445 kb on - strand, within GFF2035at 916.483 kb on + strand, within GFF2035at 916.483 kb on + strand, within GFF2035at 916.483 kb on + strand, within GFF2035at 916.483 kb on + strand, within GFF2035at 916.483 kb on + strand, within GFF2035at 916.483 kb on + strand, within GFF2035at 916.483 kb on + strand, within GFF2035at 916.483 kb on + strand, within GFF2035at 916.484 kb on - strand, within GFF2035at 916.484 kb on - strand, within GFF2035at 916.484 kb on - strand, within GFF2035at 916.484 kb on - strand, within GFF2035at 916.484 kb on - strand, within GFF2035at 916.498 kb on + strand, within GFF2035at 916.498 kb on + strand, within GFF2035at 916.498 kb on + strand, within GFF2035at 916.498 kb on + strand, within GFF2035at 916.498 kb on + strand, within GFF2035at 916.498 kb on + strand, within GFF2035at 916.684 kb on + strandat 916.684 kb on + strandat 916.684 kb on + strandat 916.684 kb on + strandat 916.684 kb on + strandat 916.684 kb on + strandat 916.685 kb on - strandat 916.685 kb on - strandat 916.685 kb on - strandat 916.685 kb on - strandat 916.685 kb on - strandat 916.734 kb on + strandat 916.734 kb on + strandat 916.734 kb on + strandat 916.734 kb on + strandat 916.734 kb on + strandat 916.734 kb on + strandat 916.734 kb on + strandat 916.735 kb on - strandat 916.735 kb on - strandat 916.735 kb on - strandat 916.735 kb on - strandat 916.735 kb on - strandat 916.740 kb on + strandat 916.740 kb on + strandat 916.740 kb on + strandat 916.740 kb on + strandat 916.741 kb on - strandat 916.741 kb on - strandat 916.741 kb on - strandat 916.741 kb on - strandat 916.790 kb on - strandat 916.790 kb on - strandat 916.805 kb on + strandat 916.805 kb on + strandat 916.805 kb on + strandat 916.805 kb on + strandat 916.806 kb on - strandat 916.806 kb on - strandat 916.806 kb on - strandat 916.806 kb on - strandat 916.806 kb on - strandat 916.806 kb on - strandat 917.124 kb on + strand, within GFF2036at 917.124 kb on + strand, within GFF2036at 917.125 kb on - strand, within GFF2036at 917.223 kb on + strand, within GFF2036at 917.223 kb on + strand, within GFF2036at 917.223 kb on + strand, within GFF2036at 917.223 kb on + strand, within GFF2036at 917.223 kb on + strand, within GFF2036at 917.223 kb on + strand, within GFF2036at 917.223 kb on + strand, within GFF2036at 917.223 kb on + strand, within GFF2036at 917.224 kb on - strand, within GFF2036at 917.224 kb on - strand, within GFF2036at 917.224 kb on - strand, within GFF2036at 917.230 kb on - strand, within GFF2036at 917.230 kb on - strand, within GFF2036at 917.230 kb on - strand, within GFF2036at 917.230 kb on - strand, within GFF2036at 917.310 kb on + strand, within GFF2036at 917.310 kb on + strand, within GFF2036at 917.310 kb on + strand, within GFF2036at 917.310 kb on + strand, within GFF2036at 917.311 kb on - strand, within GFF2036at 917.311 kb on - strand, within GFF2036at 917.311 kb on - strand, within GFF2036at 917.311 kb on - strand, within GFF2036at 917.370 kb on + strand, within GFF2036at 917.371 kb on - strand, within GFF2036at 917.469 kb on + strand, within GFF2036at 917.469 kb on + strand, within GFF2036at 917.469 kb on + strand, within GFF2036at 917.470 kb on - strand, within GFF2036at 917.470 kb on - strand, within GFF2036at 917.470 kb on - strand, within GFF2036

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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914,716 + GFF2034 0.38 +0.6
914,716 + GFF2034 0.38 -0.6
914,716 + GFF2034 0.38 -1.5
914,716 + GFF2034 0.38 -0.5
914,716 + GFF2034 0.38 -0.5
914,716 + GFF2034 0.38 -0.2
914,716 + GFF2034 0.38 +0.0
914,716 + GFF2034 0.38 -0.9
914,716 + GFF2034 0.38 -0.6
914,716 + GFF2034 0.38 +2.6
914,716 + GFF2034 0.38 +0.2
914,716 + GFF2034 0.38 -2.2
914,716 + GFF2034 0.38 -1.5
914,717 - GFF2034 0.38 -0.2
914,717 - GFF2034 0.38 +1.6
914,717 - GFF2034 0.38 +1.0
914,717 - GFF2034 0.38 -0.6
914,717 - GFF2034 0.38 +0.2
914,717 - GFF2034 0.38 -0.7
914,717 - GFF2034 0.38 +0.2
914,717 - GFF2034 0.38 +0.8
915,130 + GFF2034 0.76 -1.2
915,130 + GFF2034 0.76 -0.7
915,163 + GFF2034 0.79 +0.1
915,163 + GFF2034 0.79 -0.1
915,468 - -0.6
915,493 + +0.8
915,493 + -0.7
915,493 + -0.1
915,493 + +0.2
915,493 + +0.6
915,493 + -0.1
915,493 + +0.6
915,494 - -0.2
915,494 - +0.4
915,494 - +0.5
915,494 - +0.1
915,494 - +0.1
915,494 - +0.4
915,494 - +0.7
915,494 - -1.0
915,494 - +0.3
915,494 - +0.4
915,517 + +0.2
915,517 + -0.4
915,517 + -1.0
915,518 - -0.4
915,518 - -1.1
915,518 - +0.4
915,518 - -0.1
915,518 - -0.2
915,518 - -0.5
915,518 - -0.8
915,518 - -0.2
915,664 + GFF2035 0.15 +1.5
915,665 - GFF2035 0.15 +0.9
915,665 - GFF2035 0.15 -0.6
915,665 - GFF2035 0.15 -0.3
915,665 - GFF2035 0.15 -0.2
915,665 - GFF2035 0.15 -0.5
915,709 + GFF2035 0.19 -0.2
915,709 + GFF2035 0.19 -1.0
915,709 + GFF2035 0.19 +0.5
915,710 - GFF2035 0.19 +0.0
915,710 - GFF2035 0.19 +0.8
915,710 - GFF2035 0.19 -0.0
915,778 - GFF2035 0.24 +0.0
916,003 + GFF2035 0.44 +0.2
916,003 + GFF2035 0.44 -0.2
916,004 - GFF2035 0.44 -0.3
916,021 + GFF2035 0.45 -0.6
916,021 + GFF2035 0.45 +0.6
916,021 + GFF2035 0.45 -0.3
916,021 + GFF2035 0.45 +0.3
916,022 - GFF2035 0.45 +2.5
916,022 - GFF2035 0.45 +0.4
916,022 - GFF2035 0.45 -0.4
916,022 - GFF2035 0.45 -0.3
916,022 - GFF2035 0.45 -0.5
916,022 - GFF2035 0.45 -1.0
916,063 + GFF2035 0.49 -1.4
916,063 + GFF2035 0.49 -0.2
916,063 + GFF2035 0.49 -0.6
916,064 - GFF2035 0.49 -0.4
916,095 + GFF2035 0.52 -0.0
916,096 + GFF2035 0.52 -0.2
916,097 - GFF2035 0.52 -0.4
916,097 - GFF2035 0.52 +0.9
916,276 + GFF2035 0.67 +0.1
916,276 + GFF2035 0.67 -0.4
916,276 + GFF2035 0.67 -1.8
916,276 + GFF2035 0.67 +0.6
916,277 - GFF2035 0.67 -0.7
916,277 - GFF2035 0.67 -0.5
916,277 - GFF2035 0.67 -0.0
916,309 + GFF2035 0.70 +0.5
916,310 - GFF2035 0.70 -0.3
916,310 - GFF2035 0.70 -1.0
916,310 - GFF2035 0.70 +0.0
916,366 + GFF2035 0.75 +0.3
916,366 + GFF2035 0.75 +0.4
916,366 + GFF2035 0.75 -0.1
916,367 - GFF2035 0.75 +0.1
916,367 - GFF2035 0.75 -0.8
916,367 - GFF2035 0.75 -0.7
916,426 + GFF2035 0.80 -0.2
916,426 + GFF2035 0.80 -1.3
916,426 + GFF2035 0.80 -0.5
916,426 + GFF2035 0.80 +0.0
916,426 + GFF2035 0.80 +0.1
916,426 + GFF2035 0.80 +0.2
916,426 + GFF2035 0.80 -1.0
916,426 + GFF2035 0.80 -0.5
916,426 + GFF2035 0.80 -1.2
916,426 + GFF2035 0.80 -0.4
916,426 + GFF2035 0.80 -0.1
916,426 + GFF2035 0.80 -0.5
916,427 - GFF2035 0.80 -0.2
916,427 - GFF2035 0.80 -0.5
916,427 - GFF2035 0.80 -0.3
916,427 - GFF2035 0.80 +0.0
916,427 - GFF2035 0.80 -0.7
916,427 - GFF2035 0.80 -1.0
916,427 - GFF2035 0.80 -0.2
916,427 - GFF2035 0.80 +0.6
916,444 + GFF2035 0.81 -0.8
916,445 - GFF2035 0.81 -0.3
916,445 - GFF2035 0.81 -0.7
916,445 - GFF2035 0.81 +0.6
916,483 + GFF2035 0.85 +1.2
916,483 + GFF2035 0.85 -1.1
916,483 + GFF2035 0.85 -1.1
916,483 + GFF2035 0.85 +1.0
916,483 + GFF2035 0.85 -0.7
916,483 + GFF2035 0.85 -0.2
916,483 + GFF2035 0.85 -0.6
916,483 + GFF2035 0.85 -0.3
916,484 - GFF2035 0.85 +0.3
916,484 - GFF2035 0.85 -0.3
916,484 - GFF2035 0.85 +2.9
916,484 - GFF2035 0.85 -1.5
916,484 - GFF2035 0.85 +0.2
916,498 + GFF2035 0.86 +0.3
916,498 + GFF2035 0.86 -0.5
916,498 + GFF2035 0.86 +0.0
916,498 + GFF2035 0.86 -0.7
916,498 + GFF2035 0.86 +0.1
916,498 + GFF2035 0.86 -0.2
916,684 + +0.7
916,684 + -0.8
916,684 + +0.3
916,684 + +0.2
916,684 + -0.8
916,684 + +0.5
916,685 - +0.2
916,685 - +0.0
916,685 - -0.9
916,685 - +0.2
916,685 - +1.2
916,734 + -0.2
916,734 + +0.0
916,734 + +0.0
916,734 + -1.1
916,734 + -0.3
916,734 + +0.3
916,734 + -0.8
916,735 - -1.2
916,735 - +0.6
916,735 - +0.2
916,735 - -1.1
916,735 - -0.0
916,740 + -0.7
916,740 + -1.7
916,740 + -0.4
916,740 + -0.4
916,741 - -1.8
916,741 - -0.8
916,741 - +0.6
916,741 - +0.3
916,790 - -0.5
916,790 - -0.3
916,805 + +1.0
916,805 + -1.3
916,805 + +0.9
916,805 + -0.3
916,806 - -2.2
916,806 - -1.8
916,806 - -1.2
916,806 - +1.6
916,806 - +0.0
916,806 - -2.5
917,124 + GFF2036 0.22 -0.4
917,124 + GFF2036 0.22 -0.7
917,125 - GFF2036 0.22 -1.0
917,223 + GFF2036 0.29 +0.6
917,223 + GFF2036 0.29 -1.5
917,223 + GFF2036 0.29 -0.1
917,223 + GFF2036 0.29 -0.5
917,223 + GFF2036 0.29 -0.2
917,223 + GFF2036 0.29 -0.3
917,223 + GFF2036 0.29 -0.2
917,223 + GFF2036 0.29 +0.1
917,224 - GFF2036 0.29 +0.4
917,224 - GFF2036 0.29 -0.1
917,224 - GFF2036 0.29 -0.0
917,230 - GFF2036 0.29 +0.4
917,230 - GFF2036 0.29 -0.4
917,230 - GFF2036 0.29 -0.4
917,230 - GFF2036 0.29 -0.1
917,310 + GFF2036 0.35 +0.2
917,310 + GFF2036 0.35 -0.2
917,310 + GFF2036 0.35 +0.2
917,310 + GFF2036 0.35 -0.2
917,311 - GFF2036 0.35 -0.8
917,311 - GFF2036 0.35 -1.3
917,311 - GFF2036 0.35 -0.2
917,311 - GFF2036 0.35 +0.9
917,370 + GFF2036 0.39 -0.7
917,371 - GFF2036 0.39 -0.7
917,469 + GFF2036 0.46 -1.0
917,469 + GFF2036 0.46 -0.5
917,469 + GFF2036 0.46 -0.1
917,470 - GFF2036 0.46 +0.2
917,470 - GFF2036 0.46 -0.2
917,470 - GFF2036 0.46 +0.1

Or see this region's nucleotide sequence