Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1895

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
758,752	+		GFF1894	0.60	+0.3
758,753	-		GFF1894	0.60	+1.4
758,753	-		GFF1894	0.60	-0.7
759,121	+		GFF1894	0.83	-1.7
759,121	+		GFF1894	0.83	+0.2
759,121	+		GFF1894	0.83	+0.4
759,121	+		GFF1894	0.83	+0.4
759,121	+		GFF1894	0.83	-0.9
759,121	+		GFF1894	0.83	+0.4
759,122	-		GFF1894	0.83	-0.1
759,122	-		GFF1894	0.83	-0.2
759,122	-		GFF1894	0.83	+0.6
759,217	+		GFF1894	0.88	-0.1
759,218	-		GFF1894	0.88	-0.3
759,250	+				-0.1
759,251	-				+0.2
759,257	-				+0.3
759,283	+				+0.0
759,284	-				+0.8
759,388	+				+0.1
759,456	-				+0.1
759,544	+				+0.0
759,544	+				+0.4
759,545	-				+0.2
759,545	-				+1.0
759,589	-				-1.4
759,625	+				+0.1
759,626	-				-0.4
759,901	+		GFF1895	0.24	+0.5
759,901	+		GFF1895	0.24	+0.7
760,046	-		GFF1895	0.33	+0.4
760,229	-		GFF1895	0.45	+0.2
760,348	+		GFF1895	0.53	+1.2
760,348	+		GFF1895	0.53	+0.5
760,349	-		GFF1895	0.53	+0.7
760,978	+				+0.1
760,978	+				+0.7
760,978	+				-0.5
760,978	+				+0.3
760,979	-				+0.3
760,979	-				+1.0
760,979	-				-0.9
761,126	+				+0.4
761,126	+				-0.5
761,246	+		GFF1896	0.10	+0.5
761,246	+		GFF1896	0.10	+0.1
761,246	+		GFF1896	0.10	-0.3
761,247	-		GFF1896	0.10	-0.1
761,247	-		GFF1896	0.10	+1.1
761,703	-		GFF1896	0.57	+0.2
761,703	-		GFF1896	0.57	-1.0
761,766	-		GFF1896	0.63	-0.3
762,023	+		GFF1896	0.90	-0.4
762,023	+		GFF1896	0.90	+0.2
762,024	-		GFF1896	0.90	-0.1