Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1776

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1775 and GFF1776 overlap by 14 nucleotidesGFF1776 and GFF1777 are separated by 42 nucleotides GFF1775 - hypothetical protein, at 640,407 to 641,333 GFF1775 GFF1776 - hypothetical protein, at 641,320 to 641,490 GFF1776 GFF1777 - Auxin Efflux Carrier, at 641,533 to 642,495 GFF1777 Position (kb) 641 642Strain fitness (log2 ratio) -1 0 1 2at 640.750 kb on - strand, within GFF1775at 640.781 kb on + strand, within GFF1775at 640.781 kb on + strand, within GFF1775at 640.781 kb on + strand, within GFF1775at 641.104 kb on + strand, within GFF1775at 641.104 kb on + strand, within GFF1775at 641.105 kb on - strand, within GFF1775at 641.105 kb on - strand, within GFF1775at 641.105 kb on - strand, within GFF1775at 641.125 kb on + strand, within GFF1775at 641.795 kb on + strand, within GFF1777at 641.796 kb on - strand, within GFF1777at 642.290 kb on + strand, within GFF1777at 642.290 kb on + strand, within GFF1777at 642.290 kb on + strand, within GFF1777at 642.290 kb on + strand, within GFF1777at 642.291 kb on - strand, within GFF1777at 642.291 kb on - strand, within GFF1777at 642.291 kb on - strand, within GFF1777at 642.351 kb on - strand, within GFF1777at 642.351 kb on - strand, within GFF1777at 642.354 kb on - strand, within GFF1777at 642.440 kb on + strandat 642.440 kb on + strandat 642.441 kb on - strandat 642.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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640,750 - GFF1775 0.37 +1.1
640,781 + GFF1775 0.40 +0.8
640,781 + GFF1775 0.40 -0.2
640,781 + GFF1775 0.40 -0.2
641,104 + GFF1775 0.75 -1.5
641,104 + GFF1775 0.75 +0.3
641,105 - GFF1775 0.75 +0.2
641,105 - GFF1775 0.75 -0.9
641,105 - GFF1775 0.75 +0.4
641,125 + GFF1775 0.77 -0.2
641,795 + GFF1777 0.27 -0.3
641,796 - GFF1777 0.27 -0.2
642,290 + GFF1777 0.79 +1.4
642,290 + GFF1777 0.79 +1.1
642,290 + GFF1777 0.79 +0.6
642,290 + GFF1777 0.79 +0.9
642,291 - GFF1777 0.79 +2.0
642,291 - GFF1777 0.79 +0.3
642,291 - GFF1777 0.79 -0.0
642,351 - GFF1777 0.85 +0.1
642,351 - GFF1777 0.85 +0.8
642,354 - GFF1777 0.85 +0.1
642,440 + +0.6
642,440 + -1.4
642,441 - +0.4
642,441 - +0.1

Or see this region's nucleotide sequence