Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1748 and GFF1749 are separated by 12 nucleotides GFF1749 and GFF1750 are separated by 145 nucleotides GFF1750 and GFF1751 overlap by 4 nucleotides
GFF1748 - sensory box histidine kinase/response regulator, at 610,425 to 612,650
GFF1748
GFF1749 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 612,663 to 614,078
GFF1749
GFF1750 - Transporter, LysE family, at 614,224 to 614,838
GFF1750
GFF1751 - Permease of the drug/metabolite transporter (DMT) superfamily, at 614,835 to 615,779
GFF1751
Position (kb) 612
613
614
615 Strain fitness (log2 ratio) -1
0
1
2
3 at 611.782 kb on - strand, within GFF1748 at 612.096 kb on + strand, within GFF1748 at 612.096 kb on + strand, within GFF1748 at 612.096 kb on + strand, within GFF1748 at 612.097 kb on - strand, within GFF1748 at 612.339 kb on + strand, within GFF1748 at 612.790 kb on + strand at 612.790 kb on + strand at 612.790 kb on + strand at 612.791 kb on - strand at 612.791 kb on - strand at 612.791 kb on - strand at 612.791 kb on - strand at 612.831 kb on + strand, within GFF1749 at 613.129 kb on + strand, within GFF1749 at 613.129 kb on + strand, within GFF1749 at 613.129 kb on + strand, within GFF1749 at 613.129 kb on + strand, within GFF1749 at 613.129 kb on + strand, within GFF1749 at 613.129 kb on + strand, within GFF1749 at 613.129 kb on + strand, within GFF1749 at 613.129 kb on + strand, within GFF1749 at 613.129 kb on + strand, within GFF1749 at 613.130 kb on - strand, within GFF1749 at 613.130 kb on - strand, within GFF1749 at 613.130 kb on - strand, within GFF1749 at 613.130 kb on - strand, within GFF1749 at 613.130 kb on - strand, within GFF1749 at 613.130 kb on - strand, within GFF1749 at 613.130 kb on - strand, within GFF1749 at 613.195 kb on + strand, within GFF1749 at 613.195 kb on + strand, within GFF1749 at 613.195 kb on + strand, within GFF1749 at 613.195 kb on + strand, within GFF1749 at 613.195 kb on + strand, within GFF1749 at 613.195 kb on + strand, within GFF1749 at 613.195 kb on + strand, within GFF1749 at 613.195 kb on + strand, within GFF1749 at 613.195 kb on + strand, within GFF1749 at 613.195 kb on + strand, within GFF1749 at 613.196 kb on - strand, within GFF1749 at 613.196 kb on - strand, within GFF1749 at 613.196 kb on - strand, within GFF1749 at 613.196 kb on - strand, within GFF1749 at 613.196 kb on - strand, within GFF1749 at 613.277 kb on - strand, within GFF1749 at 613.308 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.312 kb on + strand, within GFF1749 at 613.313 kb on - strand, within GFF1749 at 613.313 kb on - strand, within GFF1749 at 613.313 kb on - strand, within GFF1749 at 613.313 kb on - strand, within GFF1749 at 613.313 kb on - strand, within GFF1749 at 613.313 kb on - strand, within GFF1749 at 613.313 kb on - strand, within GFF1749 at 613.313 kb on - strand, within GFF1749 at 613.313 kb on - strand, within GFF1749 at 613.313 kb on - strand, within GFF1749 at 613.313 kb on - strand, within GFF1749 at 613.313 kb on - strand, within GFF1749 at 613.339 kb on + strand, within GFF1749 at 613.339 kb on + strand, within GFF1749 at 613.340 kb on - strand, within GFF1749 at 613.615 kb on + strand, within GFF1749 at 613.616 kb on - strand, within GFF1749 at 613.616 kb on - strand, within GFF1749 at 613.918 kb on + strand, within GFF1749 at 613.918 kb on + strand, within GFF1749 at 613.919 kb on - strand, within GFF1749 at 614.104 kb on + strand at 614.104 kb on + strand at 614.104 kb on + strand at 614.104 kb on + strand at 614.105 kb on - strand at 614.105 kb on - strand at 614.105 kb on - strand at 614.122 kb on + strand at 614.151 kb on + strand at 614.152 kb on - strand at 614.152 kb on - strand at 614.152 kb on - strand at 614.163 kb on - strand at 614.178 kb on + strand at 614.179 kb on - strand at 614.467 kb on + strand, within GFF1750 at 614.467 kb on + strand, within GFF1750 at 614.468 kb on - strand, within GFF1750 at 614.468 kb on - strand, within GFF1750 at 614.468 kb on - strand, within GFF1750 at 614.468 kb on - strand, within GFF1750 at 614.468 kb on - strand, within GFF1750 at 614.719 kb on + strand, within GFF1750 at 614.719 kb on + strand, within GFF1750 at 614.720 kb on - strand, within GFF1750 at 614.720 kb on - strand, within GFF1750 at 614.720 kb on - strand, within GFF1750 at 614.720 kb on - strand, within GFF1750 at 614.834 kb on + strand at 614.834 kb on + strand at 614.835 kb on - strand at 614.835 kb on - strand at 614.835 kb on - strand at 614.835 kb on - strand at 614.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 611,782 - GFF1748 0.61 -0.7 612,096 + GFF1748 0.75 -1.2 612,096 + GFF1748 0.75 -0.2 612,096 + GFF1748 0.75 -0.5 612,097 - GFF1748 0.75 +0.2 612,339 + GFF1748 0.86 -1.2 612,790 + +1.3 612,790 + -0.3 612,790 + +0.1 612,791 - -0.7 612,791 - +0.1 612,791 - +1.7 612,791 - -0.3 612,831 + GFF1749 0.12 +0.2 613,129 + GFF1749 0.33 -0.8 613,129 + GFF1749 0.33 -0.5 613,129 + GFF1749 0.33 +0.3 613,129 + GFF1749 0.33 -0.8 613,129 + GFF1749 0.33 -0.7 613,129 + GFF1749 0.33 -0.8 613,129 + GFF1749 0.33 -0.5 613,129 + GFF1749 0.33 -0.6 613,129 + GFF1749 0.33 +0.0 613,130 - GFF1749 0.33 +0.1 613,130 - GFF1749 0.33 +0.1 613,130 - GFF1749 0.33 +0.8 613,130 - GFF1749 0.33 -0.6 613,130 - GFF1749 0.33 +0.2 613,130 - GFF1749 0.33 -0.9 613,130 - GFF1749 0.33 -0.1 613,195 + GFF1749 0.38 -0.6 613,195 + GFF1749 0.38 -0.1 613,195 + GFF1749 0.38 -0.2 613,195 + GFF1749 0.38 -0.3 613,195 + GFF1749 0.38 -0.5 613,195 + GFF1749 0.38 -0.9 613,195 + GFF1749 0.38 -0.4 613,195 + GFF1749 0.38 +0.8 613,195 + GFF1749 0.38 +0.2 613,195 + GFF1749 0.38 -0.3 613,196 - GFF1749 0.38 -0.3 613,196 - GFF1749 0.38 +0.2 613,196 - GFF1749 0.38 -0.0 613,196 - GFF1749 0.38 -1.2 613,196 - GFF1749 0.38 -0.6 613,277 - GFF1749 0.43 +0.4 613,308 + GFF1749 0.46 -0.5 613,312 + GFF1749 0.46 +3.0 613,312 + GFF1749 0.46 +0.7 613,312 + GFF1749 0.46 +0.4 613,312 + GFF1749 0.46 -0.4 613,312 + GFF1749 0.46 -0.7 613,312 + GFF1749 0.46 -0.4 613,312 + GFF1749 0.46 -0.2 613,312 + GFF1749 0.46 -0.5 613,312 + GFF1749 0.46 -0.9 613,312 + GFF1749 0.46 +0.7 613,312 + GFF1749 0.46 -0.2 613,312 + GFF1749 0.46 +1.4 613,312 + GFF1749 0.46 -0.2 613,313 - GFF1749 0.46 +0.0 613,313 - GFF1749 0.46 +0.8 613,313 - GFF1749 0.46 -0.3 613,313 - GFF1749 0.46 -0.7 613,313 - GFF1749 0.46 -0.2 613,313 - GFF1749 0.46 +1.7 613,313 - GFF1749 0.46 -0.0 613,313 - GFF1749 0.46 -0.5 613,313 - GFF1749 0.46 -0.2 613,313 - GFF1749 0.46 -0.1 613,313 - GFF1749 0.46 -0.5 613,313 - GFF1749 0.46 +0.8 613,339 + GFF1749 0.48 -0.7 613,339 + GFF1749 0.48 +0.7 613,340 - GFF1749 0.48 +0.2 613,615 + GFF1749 0.67 +0.5 613,616 - GFF1749 0.67 -0.3 613,616 - GFF1749 0.67 -0.0 613,918 + GFF1749 0.89 +0.5 613,918 + GFF1749 0.89 +0.1 613,919 - GFF1749 0.89 -0.2 614,104 + +0.2 614,104 + +0.1 614,104 + -0.1 614,104 + +1.3 614,105 - +0.1 614,105 - +2.3 614,105 - -0.0 614,122 + +0.5 614,151 + -1.3 614,152 - -0.1 614,152 - -1.2 614,152 - +0.7 614,163 - +0.2 614,178 + +0.2 614,179 - +0.6 614,467 + GFF1750 0.40 +0.3 614,467 + GFF1750 0.40 -0.2 614,468 - GFF1750 0.40 +0.5 614,468 - GFF1750 0.40 -0.1 614,468 - GFF1750 0.40 +0.5 614,468 - GFF1750 0.40 +0.1 614,468 - GFF1750 0.40 -0.7 614,719 + GFF1750 0.80 +0.0 614,719 + GFF1750 0.80 +0.1 614,720 - GFF1750 0.81 -1.0 614,720 - GFF1750 0.81 -0.2 614,720 - GFF1750 0.81 +1.4 614,720 - GFF1750 0.81 -0.0 614,834 + -0.3 614,834 + -0.4 614,835 - -0.3 614,835 - -0.3 614,835 - -1.5 614,835 - -0.6 614,835 - +0.4
Or see this region's nucleotide sequence