Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1703 and GFF1704 are separated by 114 nucleotides GFF1704 and GFF1705 overlap by 10 nucleotides GFF1705 and GFF1706 are separated by 22 nucleotides GFF1706 and GFF1707 are separated by 4 nucleotides
GFF1703 - tungsten-containing formate dehydrogenase beta subunit, at 558,980 to 560,698
GFF1703
GFF1704 - Periplasmic molybdate-binding domain, at 560,813 to 561,883
GFF1704
GFF1705 - 2-hydroxychromene-2-carboxylate isomerase, at 561,874 to 562,548
GFF1705
GFF1706 - YbaK/prolyl-tRNA synthetase associated region, at 562,571 to 562,798
GFF1706
GFF1707 - Uncharacterized protein SCO3165, at 562,803 to 563,312
GFF1707
Position (kb) 560
561
562 Strain fitness (log2 ratio) -2
-1
0
1 at 559.830 kb on + strand, within GFF1703 at 559.831 kb on - strand, within GFF1703 at 559.831 kb on - strand, within GFF1703 at 559.831 kb on - strand, within GFF1703 at 559.845 kb on + strand, within GFF1703 at 559.845 kb on + strand, within GFF1703 at 559.845 kb on + strand, within GFF1703 at 559.846 kb on - strand, within GFF1703 at 560.442 kb on + strand, within GFF1703 at 560.442 kb on + strand, within GFF1703 at 560.442 kb on + strand, within GFF1703 at 560.442 kb on + strand, within GFF1703 at 560.442 kb on + strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.443 kb on - strand, within GFF1703 at 560.757 kb on + strand at 560.757 kb on + strand at 560.758 kb on - strand at 560.758 kb on - strand at 560.765 kb on + strand at 560.765 kb on + strand at 560.766 kb on - strand at 560.780 kb on + strand at 560.957 kb on + strand, within GFF1704 at 560.958 kb on - strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.626 kb on + strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.627 kb on - strand, within GFF1704 at 561.719 kb on + strand, within GFF1704 at 561.719 kb on + strand, within GFF1704 at 561.719 kb on + strand, within GFF1704 at 561.719 kb on + strand, within GFF1704 at 561.720 kb on - strand, within GFF1704 at 561.828 kb on - strand at 561.956 kb on + strand, within GFF1705 at 561.957 kb on - strand, within GFF1705 at 561.957 kb on - strand, within GFF1705 at 561.957 kb on - strand, within GFF1705 at 562.223 kb on + strand, within GFF1705 at 562.362 kb on - strand, within GFF1705 at 562.362 kb on - strand, within GFF1705 at 562.509 kb on - strand at 562.526 kb on + strand at 562.527 kb on - strand at 562.527 kb on - strand at 562.649 kb on + strand, within GFF1706
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 559,830 + GFF1703 0.49 -0.2 559,831 - GFF1703 0.50 -0.4 559,831 - GFF1703 0.50 -1.9 559,831 - GFF1703 0.50 -0.4 559,845 + GFF1703 0.50 -1.1 559,845 + GFF1703 0.50 -0.1 559,845 + GFF1703 0.50 -1.2 559,846 - GFF1703 0.50 +0.1 560,442 + GFF1703 0.85 +0.4 560,442 + GFF1703 0.85 +0.5 560,442 + GFF1703 0.85 -1.5 560,442 + GFF1703 0.85 -0.1 560,442 + GFF1703 0.85 -0.1 560,443 - GFF1703 0.85 -1.4 560,443 - GFF1703 0.85 -0.0 560,443 - GFF1703 0.85 +0.8 560,443 - GFF1703 0.85 -0.4 560,443 - GFF1703 0.85 -0.2 560,443 - GFF1703 0.85 -1.9 560,443 - GFF1703 0.85 -0.7 560,757 + +0.2 560,757 + -0.4 560,758 - -0.3 560,758 - +0.6 560,765 + -0.9 560,765 + -2.1 560,766 - +0.7 560,780 + -0.7 560,957 + GFF1704 0.13 +0.2 560,958 - GFF1704 0.14 -1.4 561,626 + GFF1704 0.76 +0.5 561,626 + GFF1704 0.76 +1.2 561,626 + GFF1704 0.76 +0.6 561,626 + GFF1704 0.76 +1.1 561,626 + GFF1704 0.76 -0.0 561,626 + GFF1704 0.76 -1.5 561,626 + GFF1704 0.76 +0.7 561,626 + GFF1704 0.76 -0.4 561,626 + GFF1704 0.76 +0.3 561,626 + GFF1704 0.76 +0.2 561,626 + GFF1704 0.76 +0.1 561,627 - GFF1704 0.76 +1.1 561,627 - GFF1704 0.76 +0.8 561,627 - GFF1704 0.76 +0.4 561,627 - GFF1704 0.76 +0.6 561,627 - GFF1704 0.76 -1.0 561,627 - GFF1704 0.76 +0.5 561,627 - GFF1704 0.76 +0.1 561,627 - GFF1704 0.76 +0.1 561,719 + GFF1704 0.85 +0.2 561,719 + GFF1704 0.85 +0.8 561,719 + GFF1704 0.85 +0.6 561,719 + GFF1704 0.85 -0.1 561,720 - GFF1704 0.85 +0.5 561,828 - +0.3 561,956 + GFF1705 0.12 -0.5 561,957 - GFF1705 0.12 -0.4 561,957 - GFF1705 0.12 +0.3 561,957 - GFF1705 0.12 +0.4 562,223 + GFF1705 0.52 +1.1 562,362 - GFF1705 0.72 -0.8 562,362 - GFF1705 0.72 -0.7 562,509 - -1.6 562,526 + -1.2 562,527 - -0.7 562,527 - -0.5 562,649 + GFF1706 0.34 +0.6
Or see this region's nucleotide sequence