Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1689 and GFF1690 are separated by 9 nucleotides GFF1690 and GFF1691 are separated by 145 nucleotides GFF1691 and GFF1692 overlap by 4 nucleotides
GFF1689 - Phenylacetate-CoA oxygenase/reductase, PaaK subunit, at 539,946 to 541,052
GFF1689
GFF1690 - Outer membrane protein W precursor, at 541,062 to 541,667
GFF1690
GFF1691 - Rare lipoprotein A precursor, at 541,813 to 542,247
GFF1691
GFF1692 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 542,244 to 543,074
GFF1692
Position (kb) 541
542 Strain fitness (log2 ratio) -1
0
1
2 at 540.123 kb on + strand, within GFF1689 at 540.123 kb on + strand, within GFF1689 at 540.123 kb on + strand, within GFF1689 at 540.123 kb on + strand, within GFF1689 at 540.399 kb on + strand, within GFF1689 at 540.400 kb on - strand, within GFF1689 at 540.462 kb on + strand, within GFF1689 at 540.462 kb on + strand, within GFF1689 at 540.462 kb on + strand, within GFF1689 at 540.463 kb on - strand, within GFF1689 at 541.184 kb on - strand, within GFF1690 at 541.184 kb on - strand, within GFF1690 at 541.294 kb on + strand, within GFF1690 at 541.295 kb on - strand, within GFF1690 at 541.295 kb on - strand, within GFF1690 at 541.295 kb on - strand, within GFF1690 at 541.295 kb on - strand, within GFF1690 at 541.295 kb on - strand, within GFF1690 at 541.316 kb on - strand, within GFF1690 at 541.316 kb on - strand, within GFF1690 at 541.345 kb on + strand, within GFF1690 at 541.468 kb on + strand, within GFF1690 at 541.469 kb on - strand, within GFF1690 at 541.469 kb on - strand, within GFF1690 at 541.469 kb on - strand, within GFF1690 at 541.469 kb on - strand, within GFF1690 at 541.715 kb on - strand at 541.794 kb on + strand at 541.795 kb on - strand at 541.795 kb on - strand at 542.027 kb on + strand, within GFF1691 at 542.027 kb on + strand, within GFF1691 at 542.027 kb on + strand, within GFF1691 at 542.027 kb on + strand, within GFF1691 at 542.027 kb on + strand, within GFF1691 at 542.027 kb on + strand, within GFF1691 at 542.027 kb on + strand, within GFF1691 at 542.028 kb on - strand, within GFF1691 at 542.028 kb on - strand, within GFF1691 at 542.028 kb on - strand, within GFF1691 at 542.028 kb on - strand, within GFF1691 at 542.028 kb on - strand, within GFF1691 at 542.072 kb on + strand, within GFF1691 at 542.302 kb on + strand at 542.303 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 540,123 + GFF1689 0.16 +0.0 540,123 + GFF1689 0.16 +1.3 540,123 + GFF1689 0.16 -0.5 540,123 + GFF1689 0.16 +0.3 540,399 + GFF1689 0.41 +0.0 540,400 - GFF1689 0.41 +0.3 540,462 + GFF1689 0.47 -0.5 540,462 + GFF1689 0.47 -0.3 540,462 + GFF1689 0.47 +0.0 540,463 - GFF1689 0.47 +0.1 541,184 - GFF1690 0.20 +1.9 541,184 - GFF1690 0.20 -0.5 541,294 + GFF1690 0.38 -0.4 541,295 - GFF1690 0.38 +0.3 541,295 - GFF1690 0.38 -0.6 541,295 - GFF1690 0.38 +0.9 541,295 - GFF1690 0.38 +1.4 541,295 - GFF1690 0.38 +1.3 541,316 - GFF1690 0.42 +0.1 541,316 - GFF1690 0.42 -1.4 541,345 + GFF1690 0.47 -0.1 541,468 + GFF1690 0.67 +0.6 541,469 - GFF1690 0.67 +0.2 541,469 - GFF1690 0.67 -0.8 541,469 - GFF1690 0.67 -0.2 541,469 - GFF1690 0.67 -0.4 541,715 - +0.0 541,794 + -0.7 541,795 - +0.2 541,795 - +0.3 542,027 + GFF1691 0.49 -1.0 542,027 + GFF1691 0.49 -0.5 542,027 + GFF1691 0.49 -1.0 542,027 + GFF1691 0.49 -0.1 542,027 + GFF1691 0.49 -0.4 542,027 + GFF1691 0.49 +0.3 542,027 + GFF1691 0.49 +0.3 542,028 - GFF1691 0.49 +0.2 542,028 - GFF1691 0.49 -0.9 542,028 - GFF1691 0.49 +1.2 542,028 - GFF1691 0.49 +0.3 542,028 - GFF1691 0.49 +0.4 542,072 + GFF1691 0.60 +1.0 542,302 + -1.7 542,303 - -1.4
Or see this region's nucleotide sequence