Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1559

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1557 and GFF1558 are separated by 10 nucleotidesGFF1558 and GFF1559 overlap by 4 nucleotidesGFF1559 and GFF1560 are separated by 41 nucleotides GFF1557 - Tricarboxylate transport protein TctC, at 412,878 to 413,852 GFF1557 GFF1558 - FIG00954108: hypothetical protein, at 413,863 to 414,441 GFF1558 GFF1559 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 414,438 to 415,220 GFF1559 GFF1560 - Fumarylacetoacetate hydrolase family protein, at 415,262 to 416,236 GFF1560 Position (kb) 414 415 416Strain fitness (log2 ratio) -1 0 1at 413.808 kb on + strandat 414.245 kb on - strand, within GFF1558at 414.872 kb on - strand, within GFF1559at 414.872 kb on - strand, within GFF1559at 414.921 kb on + strand, within GFF1559at 414.921 kb on + strand, within GFF1559at 414.922 kb on - strand, within GFF1559at 415.418 kb on + strand, within GFF1560at 415.419 kb on - strand, within GFF1560at 415.602 kb on - strand, within GFF1560

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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413,808 + -0.5
414,245 - GFF1558 0.66 -1.2
414,872 - GFF1559 0.55 +0.1
414,872 - GFF1559 0.55 -0.4
414,921 + GFF1559 0.62 +0.3
414,921 + GFF1559 0.62 -0.8
414,922 - GFF1559 0.62 +0.2
415,418 + GFF1560 0.16 +0.2
415,419 - GFF1560 0.16 +0.7
415,602 - GFF1560 0.35 -0.4

Or see this region's nucleotide sequence