Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1456 and GFF1457 are separated by 116 nucleotides GFF1457 and GFF1458 are separated by 15 nucleotides GFF1458 and GFF1459 overlap by 11 nucleotides GFF1459 and GFF1460 are separated by 25 nucleotides GFF1460 and GFF1461 overlap by 14 nucleotides
GFF1456 - Flagellar hook-length control protein FliK, at 310,462 to 311,733
GFF1456
GFF1457 - Flagellar biosynthesis protein FliL, at 311,850 to 312,419
GFF1457
GFF1458 - Flagellar motor switch protein FliM, at 312,435 to 313,439
GFF1458
GFF1459 - Flagellar motor switch protein FliN, at 313,429 to 313,848
GFF1459
GFF1460 - Flagellar biosynthesis protein FliO, at 313,874 to 314,230
GFF1460
GFF1461 - Flagellar biosynthesis protein FliP, at 314,217 to 314,987
GFF1461
Position (kb) 312
313
314 Strain fitness (log2 ratio) -1
0
1
2 at 311.745 kb on - strand at 311.745 kb on - strand at 311.764 kb on + strand at 311.764 kb on + strand at 311.765 kb on - strand at 311.765 kb on - strand at 311.797 kb on + strand at 311.819 kb on + strand at 312.010 kb on - strand, within GFF1457 at 312.187 kb on - strand, within GFF1457 at 312.316 kb on - strand, within GFF1457 at 312.547 kb on - strand, within GFF1458 at 312.547 kb on - strand, within GFF1458 at 312.547 kb on - strand, within GFF1458 at 312.699 kb on + strand, within GFF1458 at 312.700 kb on - strand, within GFF1458 at 312.700 kb on - strand, within GFF1458 at 312.700 kb on - strand, within GFF1458 at 312.927 kb on + strand, within GFF1458 at 312.927 kb on + strand, within GFF1458 at 312.928 kb on - strand, within GFF1458 at 312.928 kb on - strand, within GFF1458 at 312.970 kb on - strand, within GFF1458 at 313.092 kb on + strand, within GFF1458 at 313.093 kb on - strand, within GFF1458 at 313.126 kb on - strand, within GFF1458 at 313.126 kb on - strand, within GFF1458 at 313.126 kb on - strand, within GFF1458 at 313.347 kb on + strand at 313.348 kb on - strand at 313.368 kb on + strand at 313.369 kb on - strand at 313.369 kb on - strand at 313.428 kb on + strand at 313.428 kb on + strand at 313.660 kb on + strand, within GFF1459 at 313.660 kb on + strand, within GFF1459 at 313.660 kb on + strand, within GFF1459 at 313.661 kb on - strand, within GFF1459 at 313.661 kb on - strand, within GFF1459 at 313.741 kb on + strand, within GFF1459 at 313.742 kb on - strand, within GFF1459
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 311,745 - -0.7 311,745 - +0.3 311,764 + +0.3 311,764 + -0.2 311,765 - +0.2 311,765 - +0.6 311,797 + +1.8 311,819 + +0.2 312,010 - GFF1457 0.28 +0.3 312,187 - GFF1457 0.59 +1.5 312,316 - GFF1457 0.82 -0.3 312,547 - GFF1458 0.11 -1.3 312,547 - GFF1458 0.11 +1.1 312,547 - GFF1458 0.11 +0.0 312,699 + GFF1458 0.26 +0.6 312,700 - GFF1458 0.26 -0.2 312,700 - GFF1458 0.26 +0.0 312,700 - GFF1458 0.26 -0.2 312,927 + GFF1458 0.49 +0.0 312,927 + GFF1458 0.49 -0.2 312,928 - GFF1458 0.49 +0.4 312,928 - GFF1458 0.49 +0.3 312,970 - GFF1458 0.53 -0.2 313,092 + GFF1458 0.65 -0.1 313,093 - GFF1458 0.65 -0.3 313,126 - GFF1458 0.69 -0.2 313,126 - GFF1458 0.69 -1.0 313,126 - GFF1458 0.69 +0.6 313,347 + +0.2 313,348 - -0.1 313,368 + -1.0 313,369 - +0.0 313,369 - +0.2 313,428 + +0.5 313,428 + -0.3 313,660 + GFF1459 0.55 +1.3 313,660 + GFF1459 0.55 +0.9 313,660 + GFF1459 0.55 +0.6 313,661 - GFF1459 0.55 +1.7 313,661 - GFF1459 0.55 +0.1 313,741 + GFF1459 0.74 +0.7 313,742 - GFF1459 0.75 -0.3
Or see this region's nucleotide sequence