Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1412 and GFF1413 are separated by 50 nucleotides GFF1413 and GFF1414 are separated by 26 nucleotides GFF1414 and GFF1415 are separated by 17 nucleotides GFF1415 and GFF1416 are separated by 207 nucleotides
GFF1412 - Flagellar hook protein FlgE, at 273,778 to 274,992
GFF1412
GFF1413 - Flagellar basal-body rod modification protein FlgD, at 275,043 to 275,705
GFF1413
GFF1414 - Flagellar basal-body rod protein FlgC, at 275,732 to 276,136
GFF1414
GFF1415 - Flagellar basal-body rod protein FlgB, at 276,154 to 276,567
GFF1415
GFF1416 - Flagellar basal-body P-ring formation protein FlgA, at 276,775 to 277,506
GFF1416
Position (kb) 275
276
277 Strain fitness (log2 ratio) -1
0
1 at 274.865 kb on + strand, within GFF1412 at 274.866 kb on - strand, within GFF1412 at 275.069 kb on - strand at 275.101 kb on + strand at 275.102 kb on - strand at 275.102 kb on - strand at 275.102 kb on - strand at 275.102 kb on - strand at 275.701 kb on + strand at 275.701 kb on + strand at 275.701 kb on + strand at 275.701 kb on + strand at 275.701 kb on + strand at 275.701 kb on + strand at 275.701 kb on + strand at 275.702 kb on - strand at 275.702 kb on - strand at 275.702 kb on - strand at 275.702 kb on - strand at 275.702 kb on - strand at 275.803 kb on - strand, within GFF1414 at 276.012 kb on + strand, within GFF1414 at 276.012 kb on + strand, within GFF1414 at 276.012 kb on + strand, within GFF1414 at 276.013 kb on - strand, within GFF1414 at 276.013 kb on - strand, within GFF1414 at 276.221 kb on + strand, within GFF1415 at 276.308 kb on + strand, within GFF1415 at 276.309 kb on - strand, within GFF1415 at 276.309 kb on - strand, within GFF1415 at 276.439 kb on + strand, within GFF1415 at 276.455 kb on + strand, within GFF1415 at 276.455 kb on + strand, within GFF1415 at 276.455 kb on + strand, within GFF1415 at 276.642 kb on + strand at 276.727 kb on + strand at 276.727 kb on + strand at 276.728 kb on - strand at 276.728 kb on - strand at 276.728 kb on - strand at 277.102 kb on + strand, within GFF1416 at 277.102 kb on + strand, within GFF1416 at 277.102 kb on + strand, within GFF1416 at 277.102 kb on + strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.103 kb on - strand, within GFF1416 at 277.103 kb on - strand, within GFF1416
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 274,865 + GFF1412 0.89 +0.1 274,866 - GFF1412 0.90 +0.3 275,069 - +1.1 275,101 + -0.2 275,102 - +0.4 275,102 - +0.2 275,102 - +0.2 275,102 - +0.1 275,701 + +0.3 275,701 + +0.5 275,701 + +1.3 275,701 + -0.0 275,701 + -0.3 275,701 + -0.4 275,701 + -0.0 275,702 - +0.7 275,702 - -0.1 275,702 - +0.3 275,702 - +0.3 275,702 - +0.8 275,803 - GFF1414 0.18 +0.6 276,012 + GFF1414 0.69 -0.1 276,012 + GFF1414 0.69 +0.3 276,012 + GFF1414 0.69 -0.2 276,013 - GFF1414 0.69 +0.2 276,013 - GFF1414 0.69 +0.2 276,221 + GFF1415 0.16 +1.0 276,308 + GFF1415 0.37 +0.5 276,309 - GFF1415 0.37 +0.6 276,309 - GFF1415 0.37 -1.6 276,439 + GFF1415 0.69 -1.2 276,455 + GFF1415 0.73 +0.5 276,455 + GFF1415 0.73 +0.2 276,455 + GFF1415 0.73 +1.5 276,642 + +0.1 276,727 + +0.0 276,727 + +0.1 276,728 - +0.4 276,728 - +0.8 276,728 - -0.3 277,102 + GFF1416 0.45 -0.9 277,102 + GFF1416 0.45 -0.8 277,102 + GFF1416 0.45 -0.3 277,102 + GFF1416 0.45 -1.0 277,103 - GFF1416 0.45 +0.0 277,103 - GFF1416 0.45 +0.3 277,103 - GFF1416 0.45 +0.6 277,103 - GFF1416 0.45 -0.1 277,103 - GFF1416 0.45 +0.1 277,103 - GFF1416 0.45 +0.1 277,103 - GFF1416 0.45 +0.0
Or see this region's nucleotide sequence