Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1382 and GFF1383 are separated by 13 nucleotides GFF1383 and GFF1384 overlap by 4 nucleotides GFF1384 and GFF1385 are separated by 4 nucleotides GFF1385 and GFF1386 are separated by 59 nucleotides
GFF1382 - General secretion pathway protein G, at 238,009 to 238,479
GFF1382
GFF1383 - General secretion pathway protein H, at 238,493 to 238,951
GFF1383
GFF1384 - General secretion pathway protein I, at 238,948 to 239,316
GFF1384
GFF1385 - General secretion pathway protein J, at 239,321 to 240,052
GFF1385
GFF1386 - General secretion pathway protein K, at 240,112 to 241,113
GFF1386
Position (kb) 239
240
241 Strain fitness (log2 ratio) -2
-1
0
1 at 238.330 kb on + strand, within GFF1382 at 238.370 kb on - strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.376 kb on - strand, within GFF1382 at 239.858 kb on + strand, within GFF1385 at 239.859 kb on - strand, within GFF1385 at 239.859 kb on - strand, within GFF1385 at 239.859 kb on - strand, within GFF1385 at 239.859 kb on - strand, within GFF1385 at 240.601 kb on + strand, within GFF1386 at 240.602 kb on - strand, within GFF1386 at 240.973 kb on + strand, within GFF1386
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 238,330 + GFF1382 0.68 -0.4 238,370 - GFF1382 0.77 -0.4 238,375 + GFF1382 0.78 +1.3 238,375 + GFF1382 0.78 +0.0 238,375 + GFF1382 0.78 -2.4 238,375 + GFF1382 0.78 -0.2 238,375 + GFF1382 0.78 -0.3 238,376 - GFF1382 0.78 +0.3 239,858 + GFF1385 0.73 -0.2 239,859 - GFF1385 0.73 -0.3 239,859 - GFF1385 0.73 -0.3 239,859 - GFF1385 0.73 -0.5 239,859 - GFF1385 0.73 -0.2 240,601 + GFF1386 0.49 +0.2 240,602 - GFF1386 0.49 +0.3 240,973 + GFF1386 0.86 -0.9
Or see this region's nucleotide sequence