Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF130

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF129 and GFF130 are separated by 22 nucleotidesGFF130 and GFF131 overlap by 1 nucleotidesGFF131 and GFF132 overlap by 29 nucleotides GFF129 - Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8), at 144,089 to 145,666 GFF129 GFF130 - TRAP transporter solute receptor, unknown substrate 3, at 145,689 to 146,750 GFF130 GFF131 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3, at 146,750 to 147,256 GFF131 GFF132 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 147,228 to 148,547 GFF132 Position (kb) 145 146 147Strain fitness (log2 ratio) -1 0 1at 144.873 kb on - strand, within GFF129at 144.887 kb on + strand, within GFF129at 145.448 kb on + strand, within GFF129at 146.841 kb on - strand, within GFF131at 146.930 kb on + strand, within GFF131at 147.122 kb on + strand, within GFF131at 147.423 kb on + strand, within GFF132at 147.423 kb on + strand, within GFF132at 147.654 kb on + strand, within GFF132at 147.739 kb on - strand, within GFF132

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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144,873 - GFF129 0.50 +1.6
144,887 + GFF129 0.51 -0.1
145,448 + GFF129 0.86 +1.5
146,841 - GFF131 0.18 -0.1
146,930 + GFF131 0.36 -0.3
147,122 + GFF131 0.73 -0.8
147,423 + GFF132 0.15 +0.5
147,423 + GFF132 0.15 +0.7
147,654 + GFF132 0.32 -1.1
147,739 - GFF132 0.39 +0.3

Or see this region's nucleotide sequence