Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1171

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1169 and GFF1170 are separated by 101 nucleotidesGFF1170 and GFF1171 are separated by 62 nucleotidesGFF1171 and GFF1172 are separated by 22 nucleotidesGFF1172 and GFF1173 are separated by 171 nucleotides GFF1169 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8), at 27,568 to 28,014 GFF1169 GFF1170 - DNA repair protein RadC, at 28,116 to 28,808 GFF1170 GFF1171 - hypothetical protein, at 28,871 to 29,383 GFF1171 GFF1172 - Chloramphenicol-sensitive protein rarD, at 29,406 to 30,197 GFF1172 GFF1173 - Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4), at 30,369 to 32,015 GFF1173 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 27.975 kb on - strandat 28.014 kb on + strandat 28.014 kb on + strandat 28.014 kb on + strandat 28.015 kb on - strandat 28.015 kb on - strandat 28.027 kb on + strandat 28.079 kb on + strandat 28.079 kb on + strandat 28.079 kb on + strandat 28.079 kb on + strandat 28.080 kb on - strandat 28.080 kb on - strandat 28.080 kb on - strandat 28.084 kb on + strandat 28.084 kb on + strandat 28.084 kb on + strandat 28.084 kb on + strandat 28.085 kb on - strandat 28.085 kb on - strandat 28.085 kb on - strandat 28.319 kb on + strand, within GFF1170at 28.468 kb on - strand, within GFF1170at 28.518 kb on + strand, within GFF1170at 28.518 kb on + strand, within GFF1170at 28.518 kb on + strand, within GFF1170at 28.518 kb on + strand, within GFF1170at 28.518 kb on + strand, within GFF1170at 28.519 kb on - strand, within GFF1170at 28.591 kb on - strand, within GFF1170at 28.806 kb on + strandat 28.807 kb on - strandat 28.807 kb on - strandat 28.873 kb on - strandat 28.946 kb on + strand, within GFF1171at 28.947 kb on - strand, within GFF1171at 29.085 kb on + strand, within GFF1171at 29.334 kb on + strandat 29.334 kb on + strandat 29.335 kb on - strandat 29.335 kb on - strandat 29.335 kb on - strandat 29.335 kb on - strandat 29.335 kb on - strandat 29.335 kb on - strandat 29.335 kb on - strandat 29.335 kb on - strandat 29.335 kb on - strandat 29.345 kb on + strandat 29.479 kb on + strandat 29.480 kb on - strandat 29.480 kb on - strandat 29.576 kb on + strand, within GFF1172at 29.576 kb on + strand, within GFF1172at 29.577 kb on - strand, within GFF1172at 29.577 kb on - strand, within GFF1172at 29.577 kb on - strand, within GFF1172at 29.577 kb on - strand, within GFF1172at 29.587 kb on + strand, within GFF1172at 29.587 kb on + strand, within GFF1172at 29.587 kb on + strand, within GFF1172at 29.588 kb on - strand, within GFF1172at 29.603 kb on + strand, within GFF1172at 29.603 kb on + strand, within GFF1172at 29.603 kb on + strand, within GFF1172at 29.638 kb on + strand, within GFF1172at 29.638 kb on + strand, within GFF1172at 29.721 kb on + strand, within GFF1172at 29.721 kb on + strand, within GFF1172at 29.722 kb on - strand, within GFF1172at 29.722 kb on - strand, within GFF1172at 29.722 kb on - strand, within GFF1172at 29.722 kb on - strand, within GFF1172at 29.736 kb on + strand, within GFF1172at 29.736 kb on + strand, within GFF1172at 29.736 kb on + strand, within GFF1172at 29.736 kb on + strand, within GFF1172at 29.737 kb on - strand, within GFF1172at 29.737 kb on - strand, within GFF1172at 29.737 kb on - strand, within GFF1172at 29.741 kb on - strand, within GFF1172at 29.741 kb on - strand, within GFF1172at 29.773 kb on - strand, within GFF1172at 29.773 kb on - strand, within GFF1172at 29.833 kb on + strand, within GFF1172at 29.834 kb on - strand, within GFF1172at 29.842 kb on + strand, within GFF1172at 29.842 kb on + strand, within GFF1172at 29.843 kb on - strand, within GFF1172at 29.908 kb on + strand, within GFF1172at 29.908 kb on + strand, within GFF1172at 29.908 kb on + strand, within GFF1172at 29.908 kb on + strand, within GFF1172at 29.908 kb on + strand, within GFF1172at 29.909 kb on - strand, within GFF1172at 30.012 kb on + strand, within GFF1172at 30.013 kb on - strand, within GFF1172at 30.016 kb on + strand, within GFF1172at 30.016 kb on + strand, within GFF1172at 30.016 kb on + strand, within GFF1172at 30.016 kb on + strand, within GFF1172at 30.017 kb on - strand, within GFF1172at 30.017 kb on - strand, within GFF1172at 30.017 kb on - strand, within GFF1172at 30.017 kb on - strand, within GFF1172at 30.019 kb on + strand, within GFF1172at 30.019 kb on + strand, within GFF1172at 30.020 kb on - strand, within GFF1172at 30.061 kb on + strand, within GFF1172at 30.061 kb on + strand, within GFF1172at 30.061 kb on + strand, within GFF1172at 30.061 kb on + strand, within GFF1172at 30.062 kb on - strand, within GFF1172at 30.062 kb on - strand, within GFF1172at 30.062 kb on - strand, within GFF1172at 30.062 kb on - strand, within GFF1172at 30.062 kb on - strand, within GFF1172at 30.067 kb on + strand, within GFF1172at 30.067 kb on + strand, within GFF1172at 30.067 kb on + strand, within GFF1172at 30.067 kb on + strand, within GFF1172at 30.067 kb on + strand, within GFF1172at 30.068 kb on - strand, within GFF1172at 30.068 kb on - strand, within GFF1172at 30.068 kb on - strand, within GFF1172at 30.068 kb on - strand, within GFF1172at 30.068 kb on - strand, within GFF1172at 30.135 kb on - strandat 30.226 kb on - strandat 30.232 kb on + strandat 30.232 kb on + strandat 30.232 kb on + strandat 30.233 kb on - strandat 30.233 kb on - strandat 30.233 kb on - strandat 30.233 kb on - strandat 30.236 kb on + strandat 30.236 kb on + strandat 30.236 kb on + strandat 30.237 kb on - strandat 30.237 kb on - strandat 30.237 kb on - strandat 30.237 kb on - strandat 30.237 kb on - strandat 30.260 kb on - strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.272 kb on - strandat 30.282 kb on + strandat 30.283 kb on - strandat 30.324 kb on - strandat 30.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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27,975 - +0.6
28,014 + -0.6
28,014 + +0.7
28,014 + -0.3
28,015 - +1.9
28,015 - +0.4
28,027 + +0.2
28,079 + -0.4
28,079 + -0.8
28,079 + -0.7
28,079 + +0.6
28,080 - +0.7
28,080 - +0.2
28,080 - +0.2
28,084 + -0.7
28,084 + -0.7
28,084 + -0.5
28,084 + -0.4
28,085 - -0.0
28,085 - +1.8
28,085 - -0.0
28,319 + GFF1170 0.29 -0.1
28,468 - GFF1170 0.51 +0.3
28,518 + GFF1170 0.58 -0.2
28,518 + GFF1170 0.58 +0.4
28,518 + GFF1170 0.58 +0.8
28,518 + GFF1170 0.58 -0.4
28,518 + GFF1170 0.58 +1.0
28,519 - GFF1170 0.58 +0.3
28,591 - GFF1170 0.69 +0.4
28,806 + -0.8
28,807 - +0.6
28,807 - +0.3
28,873 - +0.3
28,946 + GFF1171 0.15 -0.1
28,947 - GFF1171 0.15 -0.6
29,085 + GFF1171 0.42 -1.7
29,334 + -0.1
29,334 + -0.3
29,335 - +0.1
29,335 - +0.6
29,335 - +0.2
29,335 - -0.8
29,335 - -0.0
29,335 - +0.9
29,335 - +1.3
29,335 - -0.0
29,335 - -0.3
29,345 + +0.9
29,479 + +0.2
29,480 - +2.0
29,480 - -0.2
29,576 + GFF1172 0.21 -0.3
29,576 + GFF1172 0.21 -0.2
29,577 - GFF1172 0.22 -0.3
29,577 - GFF1172 0.22 -0.2
29,577 - GFF1172 0.22 -0.9
29,577 - GFF1172 0.22 +0.5
29,587 + GFF1172 0.23 +1.3
29,587 + GFF1172 0.23 -0.4
29,587 + GFF1172 0.23 -0.0
29,588 - GFF1172 0.23 -0.1
29,603 + GFF1172 0.25 -0.2
29,603 + GFF1172 0.25 -0.2
29,603 + GFF1172 0.25 +1.1
29,638 + GFF1172 0.29 +0.3
29,638 + GFF1172 0.29 -0.7
29,721 + GFF1172 0.40 -0.5
29,721 + GFF1172 0.40 +0.3
29,722 - GFF1172 0.40 +0.1
29,722 - GFF1172 0.40 +1.3
29,722 - GFF1172 0.40 +0.2
29,722 - GFF1172 0.40 -0.2
29,736 + GFF1172 0.42 +0.1
29,736 + GFF1172 0.42 +1.0
29,736 + GFF1172 0.42 -0.2
29,736 + GFF1172 0.42 +0.0
29,737 - GFF1172 0.42 -0.2
29,737 - GFF1172 0.42 +1.4
29,737 - GFF1172 0.42 +0.5
29,741 - GFF1172 0.42 +0.8
29,741 - GFF1172 0.42 -0.1
29,773 - GFF1172 0.46 -0.0
29,773 - GFF1172 0.46 -0.1
29,833 + GFF1172 0.54 +0.5
29,834 - GFF1172 0.54 +0.2
29,842 + GFF1172 0.55 -0.3
29,842 + GFF1172 0.55 -0.1
29,843 - GFF1172 0.55 +0.1
29,908 + GFF1172 0.63 +0.8
29,908 + GFF1172 0.63 +0.7
29,908 + GFF1172 0.63 +0.5
29,908 + GFF1172 0.63 -0.3
29,908 + GFF1172 0.63 -0.6
29,909 - GFF1172 0.64 +0.1
30,012 + GFF1172 0.77 -0.6
30,013 - GFF1172 0.77 -0.3
30,016 + GFF1172 0.77 +0.7
30,016 + GFF1172 0.77 -0.3
30,016 + GFF1172 0.77 -1.5
30,016 + GFF1172 0.77 -0.2
30,017 - GFF1172 0.77 +0.2
30,017 - GFF1172 0.77 -1.9
30,017 - GFF1172 0.77 +0.6
30,017 - GFF1172 0.77 +0.6
30,019 + GFF1172 0.77 +0.1
30,019 + GFF1172 0.77 -0.6
30,020 - GFF1172 0.78 -0.1
30,061 + GFF1172 0.83 +1.1
30,061 + GFF1172 0.83 +0.3
30,061 + GFF1172 0.83 +0.5
30,061 + GFF1172 0.83 +0.4
30,062 - GFF1172 0.83 +0.3
30,062 - GFF1172 0.83 +0.6
30,062 - GFF1172 0.83 -0.4
30,062 - GFF1172 0.83 +0.7
30,062 - GFF1172 0.83 +0.2
30,067 + GFF1172 0.83 -0.0
30,067 + GFF1172 0.83 +0.3
30,067 + GFF1172 0.83 -0.8
30,067 + GFF1172 0.83 +1.8
30,067 + GFF1172 0.83 +1.6
30,068 - GFF1172 0.84 +0.1
30,068 - GFF1172 0.84 +0.1
30,068 - GFF1172 0.84 +0.0
30,068 - GFF1172 0.84 +0.2
30,068 - GFF1172 0.84 -0.0
30,135 - -0.5
30,226 - -0.2
30,232 + -1.2
30,232 + -0.0
30,232 + -0.3
30,233 - -0.6
30,233 - +0.6
30,233 - -0.7
30,233 - +0.5
30,236 + -0.3
30,236 + +2.1
30,236 + -0.0
30,237 - +0.1
30,237 - +0.4
30,237 - -0.1
30,237 - -0.1
30,237 - +0.3
30,260 - +0.0
30,271 + +0.0
30,271 + -0.0
30,271 + +0.1
30,271 + -0.1
30,272 - -1.6
30,282 + +0.1
30,283 - -0.1
30,324 - +1.3
30,324 - -0.5

Or see this region's nucleotide sequence