Strain Fitness in Escherichia fergusonii Becca around EFB2_03410

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community
3,562,953	+		EFB2_03408	0.46	-0.2
3,563,041	+		EFB2_03408	0.58	+0.0
3,563,057	+		EFB2_03408	0.60	-0.4
3,563,057	+		EFB2_03408	0.60	+0.4
3,563,057	+		EFB2_03408	0.60	+0.1
3,563,057	+		EFB2_03408	0.60	-0.0
3,563,057	+		EFB2_03408	0.60	-0.9
3,563,057	+		EFB2_03408	0.60	-0.5
3,563,058	-		EFB2_03408	0.60	+0.4
3,563,058	-		EFB2_03408	0.60	+1.1
3,563,117	+		EFB2_03408	0.68	+0.6
3,563,119	-		EFB2_03408	0.68	-0.2
3,563,128	+		EFB2_03408	0.69	+0.1
3,563,128	+		EFB2_03408	0.69	-0.0
3,563,128	+		EFB2_03408	0.69	-2.6
3,563,128	+		EFB2_03408	0.69	+0.4
3,563,129	-		EFB2_03408	0.69	-1.0
3,563,150	+		EFB2_03408	0.72	-0.8
3,563,150	+		EFB2_03408	0.72	+0.5
3,563,151	-		EFB2_03408	0.72	-0.3
3,563,151	-		EFB2_03408	0.72	+0.1
3,563,189	+		EFB2_03408	0.77	-1.4
3,563,189	+		EFB2_03408	0.77	-0.7
3,563,190	-		EFB2_03408	0.77	-1.1
3,563,190	-		EFB2_03408	0.77	-0.9
3,563,220	+		EFB2_03408	0.81	-0.6
3,563,221	-		EFB2_03408	0.81	+1.1
3,563,221	-		EFB2_03408	0.81	-1.3
3,563,221	-		EFB2_03408	0.81	+1.9
3,563,221	-		EFB2_03408	0.81	-0.4
3,563,235	+		EFB2_03408	0.83	+2.1
3,563,248	+		EFB2_03408	0.85	-1.5
3,563,249	-		EFB2_03408	0.85	+0.3
3,563,249	-		EFB2_03408	0.85	+0.9
3,563,329	+				-2.0
3,563,332	+				+1.5
3,563,332	+				+0.3
3,563,332	+				-0.1
3,563,350	-				-0.2
3,563,374	+				+0.3
3,563,374	+				-0.7
3,563,437	+				+0.3
3,563,437	+				-1.2
3,563,437	+				+0.9
3,563,437	+				+0.9
3,563,437	+				-1.1
3,563,437	+				-1.6
3,563,437	+				-0.8
3,563,437	+				-1.0
3,563,437	+				-0.2
3,563,437	+				+0.3
3,563,437	+				+0.7
3,563,437	+				+0.8
3,563,437	+				+0.6
3,563,437	+				-2.1
3,563,438	-				+1.0
3,563,438	-				-0.1
3,563,438	-				-0.9
3,563,438	-				+1.9
3,563,438	-				-2.4
3,563,438	-				-1.7
3,563,438	-				-1.0
3,563,438	-				-0.9
3,563,438	-				+1.0
3,563,438	-				-1.9
3,563,438	-				+0.5
3,563,438	-				-0.1
3,563,438	-				-0.4
3,563,438	-				+1.3
3,563,438	-				-0.8
3,563,438	-				-2.6
3,563,438	-				+0.1
3,563,438	-				+0.5
3,563,438	-				-0.8
3,563,438	-				-1.4
3,563,438	-				-0.2
3,563,438	-				-0.1
3,563,438	-				-1.0
3,563,438	-				-2.9
3,563,438	-				-2.4
3,563,438	-				-0.9
3,563,438	-				+0.9
3,563,438	-				-2.6
3,563,438	-				-1.7
3,563,438	-				-1.9
3,563,438	-				+1.2
3,563,438	-				-2.4
3,563,440	+				-1.1
3,563,440	+				+0.2
3,563,440	+				-0.3
3,563,440	+				+0.8
3,563,441	-				-0.7
3,563,441	-				+0.0
3,563,441	-				-0.2
3,563,441	-				+0.3
3,563,450	+				+0.0
3,563,526	+		EFB2_03409	0.25	+1.0
3,563,526	+		EFB2_03409	0.25	+1.3
3,563,527	-		EFB2_03409	0.26	+2.3
3,563,534	+		EFB2_03409	0.28	-0.9
3,563,534	+		EFB2_03409	0.28	-2.3
3,563,534	+		EFB2_03409	0.28	-3.0
3,563,534	+		EFB2_03409	0.28	+0.4
3,563,534	+		EFB2_03409	0.28	-0.5
3,563,534	+		EFB2_03409	0.28	-0.1
3,563,534	+		EFB2_03409	0.28	-0.4
3,563,534	+		EFB2_03409	0.28	+1.0
3,563,534	+		EFB2_03409	0.28	+0.3
3,563,534	+		EFB2_03409	0.28	-0.3
3,563,534	+		EFB2_03409	0.28	-1.7
3,563,534	+		EFB2_03409	0.28	-0.5
3,563,534	+		EFB2_03409	0.28	-1.1
3,563,534	+		EFB2_03409	0.28	+0.6
3,563,534	+		EFB2_03409	0.28	+0.4
3,563,535	-		EFB2_03409	0.28	+0.7
3,563,535	-		EFB2_03409	0.28	-0.1
3,563,535	-		EFB2_03409	0.28	-2.6
3,563,535	-		EFB2_03409	0.28	-1.4
3,563,535	-		EFB2_03409	0.28	+1.3
3,563,535	-		EFB2_03409	0.28	+0.3
3,563,535	-		EFB2_03409	0.28	-2.6
3,563,535	-		EFB2_03409	0.28	-3.3
3,563,535	-		EFB2_03409	0.28	-0.2
3,563,535	-		EFB2_03409	0.28	-0.0
3,563,535	-		EFB2_03409	0.28	-0.1
3,563,535	-		EFB2_03409	0.28	+1.5
3,563,535	-		EFB2_03409	0.28	+1.5
3,563,535	-		EFB2_03409	0.28	+2.1
3,563,535	-		EFB2_03409	0.28	+0.8
3,563,535	-		EFB2_03409	0.28	-0.6
3,563,535	-		EFB2_03409	0.28	-0.2
3,563,535	-		EFB2_03409	0.28	+0.4
3,563,535	-		EFB2_03409	0.28	+0.9
3,563,535	-		EFB2_03409	0.28	+2.0
3,563,535	-		EFB2_03409	0.28	+0.1
3,563,535	-		EFB2_03409	0.28	+0.1
3,563,535	-		EFB2_03409	0.28	-0.7
3,563,535	-		EFB2_03409	0.28	-1.3
3,563,535	-		EFB2_03409	0.28	-0.9
3,563,577	+		EFB2_03409	0.39	-0.8
3,563,578	-		EFB2_03409	0.40	+1.0
3,563,607	+		EFB2_03409	0.48	+0.4
3,563,607	+		EFB2_03409	0.48	+0.9
3,563,607	+		EFB2_03409	0.48	-0.6
3,563,607	+		EFB2_03409	0.48	-0.2
3,563,607	+		EFB2_03409	0.48	-1.3
3,563,608	-		EFB2_03409	0.48	-2.4
3,563,608	-		EFB2_03409	0.48	-2.3
3,563,608	-		EFB2_03409	0.48	-1.5
3,563,608	-		EFB2_03409	0.48	+1.2
3,563,608	-		EFB2_03409	0.48	-0.0
3,563,610	+		EFB2_03409	0.48	-0.4
3,563,610	+		EFB2_03409	0.48	+0.8
3,563,610	+		EFB2_03409	0.48	+0.9
3,563,610	+		EFB2_03409	0.48	+0.5
3,563,611	-		EFB2_03409	0.49	-0.7
3,563,611	-		EFB2_03409	0.49	+0.8
3,563,611	-		EFB2_03409	0.49	+0.4
3,563,611	-		EFB2_03409	0.49	+1.0
3,563,611	-		EFB2_03409	0.49	-0.0
3,563,627	+		EFB2_03409	0.53	+0.5
3,563,627	+		EFB2_03409	0.53	-1.3
3,563,642	+		EFB2_03409	0.57	-0.7
3,563,642	+		EFB2_03409	0.57	-3.0
3,563,642	+		EFB2_03409	0.57	+0.8
3,563,642	+		EFB2_03409	0.57	+0.7
3,563,642	+		EFB2_03409	0.57	-2.4
3,563,642	+		EFB2_03409	0.57	+0.0
3,563,642	+		EFB2_03409	0.57	+0.9
3,563,642	+		EFB2_03409	0.57	-0.5
3,563,642	+		EFB2_03409	0.57	-1.3
3,563,642	+		EFB2_03409	0.57	-1.5
3,563,642	+		EFB2_03409	0.57	+0.6
3,563,642	+		EFB2_03409	0.57	+0.9
3,563,642	+		EFB2_03409	0.57	-0.7
3,563,642	+		EFB2_03409	0.57	-1.0
3,563,642	+		EFB2_03409	0.57	-2.4
3,563,642	+		EFB2_03409	0.57	-0.7
3,563,642	+		EFB2_03409	0.57	+0.5
3,563,642	+		EFB2_03409	0.57	-0.3
3,563,642	+		EFB2_03409	0.57	-0.7
3,563,642	+		EFB2_03409	0.57	+0.2
3,563,642	+		EFB2_03409	0.57	+0.7
3,563,642	+		EFB2_03409	0.57	+0.9
3,563,642	+		EFB2_03409	0.57	+0.0
3,563,643	-		EFB2_03409	0.58	+0.7
3,563,643	-		EFB2_03409	0.58	-0.5
3,563,643	-		EFB2_03409	0.58	+1.7
3,563,643	-		EFB2_03409	0.58	+0.6
3,563,643	-		EFB2_03409	0.58	+0.1
3,563,652	+		EFB2_03409	0.60	+0.8
3,563,652	+		EFB2_03409	0.60	-0.7
3,563,653	-		EFB2_03409	0.60	+1.1
3,563,653	-		EFB2_03409	0.60	+0.5
3,563,653	-		EFB2_03409	0.60	-0.5
3,563,653	-		EFB2_03409	0.60	+0.9
3,563,721	+		EFB2_03409	0.79	-1.3
3,563,721	+		EFB2_03409	0.79	-0.9
3,563,721	+		EFB2_03409	0.79	+0.7
3,563,721	+		EFB2_03409	0.79	-0.6
3,563,722	-		EFB2_03409	0.79	+0.0
3,563,753	+		EFB2_03409	0.88	-1.0
3,563,753	+		EFB2_03409	0.88	-3.2
3,563,754	-		EFB2_03409	0.88	-0.4
3,563,754	-		EFB2_03409	0.88	+1.6
3,563,778	+				-1.0
3,563,778	+				+0.3
3,563,795	-				+2.9
3,563,812	+				+0.9
3,563,812	+				-0.0
3,563,812	+				-0.3
3,563,812	+				-1.3
3,563,812	+				-0.4
3,563,812	+				+0.1
3,563,812	+				-0.0
3,563,812	+				+0.8
3,563,812	+				-1.9
3,563,812	+				+0.7
3,563,812	+				+1.3
3,563,812	+				+2.3
3,563,812	+				-3.4
3,563,812	+				+1.3
3,563,812	+				+0.7
3,563,812	+				-3.0
3,563,812	+				+1.9
3,563,812	+				+0.2
3,563,812	+				+0.4
3,563,812	+				-0.7
3,563,812	+				-0.7
3,563,813	-				-1.0
3,563,813	-				+0.5
3,563,813	-				+0.6
3,563,813	-				-0.0
3,563,813	-				-0.3
3,563,813	-				+0.9
3,563,813	-				-0.5
3,563,813	-				-1.5
3,563,813	-				-0.6
3,563,813	-				+0.3
3,563,813	-				-0.9
3,563,813	-				+0.1
3,563,813	-				+1.2
3,563,813	-				-0.8
3,563,813	-				-0.3
3,563,813	-				-0.7
3,563,813	-				+4.3
3,563,867	+				-0.4
3,564,478	+				+0.2
3,564,478	+				-2.6
3,564,478	+				+0.2
3,564,490	+				-2.0
3,564,491	-				+1.8
3,564,501	-				-0.4
3,564,503	+				+0.0
3,564,503	+				-0.0
3,564,504	-				-1.0
3,564,504	-				-0.2
3,564,529	+				-1.9
3,564,554	+				-0.9
3,564,554	+				+0.9
3,564,554	+				+4.0
3,564,554	+				+0.7
3,564,554	+				+0.3
3,564,554	+				-0.8
3,564,554	+				+0.5
3,564,554	+				-0.4
3,564,554	+				-0.7
3,564,554	+				-0.3
3,564,554	+				+0.7
3,564,554	+				+0.5
3,564,554	+				-3.2
3,564,554	+				+0.0
3,564,555	-				+2.3
3,564,555	-				+1.3
3,564,555	-				+0.3
3,564,555	-				+2.3
3,564,560	+				+0.3
3,564,560	+				-2.1
3,564,560	+				-0.6
3,564,560	+				+0.9
3,564,561	-				-0.6
3,564,561	-				-0.1
3,564,561	-				+1.4
3,564,595	+				+2.3
3,564,595	+				+0.1
3,564,595	+				+0.3
3,564,595	+				-1.1
3,564,595	+				+1.1
3,564,595	+				-1.5
3,564,595	+				-1.5
3,564,595	+				+0.1
3,564,595	+				-1.2
3,564,595	+				-0.0
3,564,595	+				-0.9
3,564,595	+				+1.9
3,564,596	-				+1.3
3,564,596	-				-0.0
3,564,596	-				+1.0
3,564,596	-				+1.3
3,564,596	-				-0.4
3,564,596	-				-1.3
3,564,596	-				-1.4
3,564,601	+				-0.5
3,564,601	+				-0.6
3,564,602	-				-0.7
3,564,602	-				-1.0
3,564,602	-				-0.2
3,564,602	-				+0.7
3,564,619	+				-0.5
3,564,619	+				+1.4
3,564,620	-				-0.5
3,564,623	-				+0.8
3,564,628	+				-0.5
3,564,629	-				-0.3
3,564,629	-				-0.7
3,564,656	+				+1.7
3,564,656	+				+1.9
3,564,656	+				-0.3
3,564,656	+				-2.1
3,564,671	+				+2.6
3,564,671	+				+1.1
3,564,672	-				-0.5
3,564,679	+				-0.0
3,564,869	+		EFB2_03411	0.26	-1.6
3,564,871	+		EFB2_03411	0.26	+2.3
3,565,135	+		EFB2_03411	0.85	+0.3
3,565,198	+				+0.1
3,565,199	-				-0.3
3,565,272	+				+0.1
3,565,272	+				-0.1
3,565,272	+				-1.0
3,565,272	+				+2.1
3,565,272	+				-0.3
3,565,273	-				+0.8
3,565,273	-				-1.1
3,565,273	-				-2.8
3,565,273	-				+0.6
3,565,273	-				+0.8
3,565,273	-				-1.6
3,565,285	+				+0.1
3,565,286	-				-0.6
3,565,286	-				+0.3
3,565,286	-				+0.2
3,565,286	-				-0.8
3,565,286	-				+1.3
3,565,293	-				-0.5
3,565,293	-				-0.1
3,565,293	-				-0.5
3,565,295	+				+0.9
3,565,295	+				+1.0
3,565,296	-				-0.1
3,565,296	-				-0.3
3,565,370	+		EFB2_03412	0.26	-0.9
3,565,370	+		EFB2_03412	0.26	-0.5
3,565,370	+		EFB2_03412	0.26	-1.3
3,565,370	+		EFB2_03412	0.26	-0.9
3,565,370	+		EFB2_03412	0.26	+0.3
3,565,370	+		EFB2_03412	0.26	+1.9
3,565,370	+		EFB2_03412	0.26	+0.5
3,565,370	+		EFB2_03412	0.26	+0.7
3,565,370	+		EFB2_03412	0.26	-0.5
3,565,370	+		EFB2_03412	0.26	+0.5
3,565,370	+		EFB2_03412	0.26	-0.1
3,565,371	-		EFB2_03412	0.27	-0.0
3,565,371	-		EFB2_03412	0.27	+0.9
3,565,371	-		EFB2_03412	0.27	-1.1
3,565,371	-		EFB2_03412	0.27	-1.4
3,565,382	-		EFB2_03412	0.30	+1.2
3,565,449	+		EFB2_03412	0.50	-1.2
3,565,449	+		EFB2_03412	0.50	-0.2