Strain Fitness in Escherichia fergusonii Becca around EFB2_01608

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community
1,682,229	+		EFB2_01607	0.35	+0.4
1,682,229	+		EFB2_01607	0.35	+0.6
1,682,229	+		EFB2_01607	0.35	+1.6
1,682,229	+		EFB2_01607	0.35	+0.1
1,682,230	-		EFB2_01607	0.35	-0.0
1,682,230	-		EFB2_01607	0.35	+0.7
1,682,230	-		EFB2_01607	0.35	-0.6
1,682,230	-		EFB2_01607	0.35	+1.1
1,682,250	+		EFB2_01607	0.37	-0.4
1,682,261	+		EFB2_01607	0.38	-1.2
1,682,262	-		EFB2_01607	0.38	+1.3
1,682,275	-		EFB2_01607	0.39	+1.2
1,682,327	+		EFB2_01607	0.43	-1.3
1,682,358	+		EFB2_01607	0.46	+0.2
1,682,405	+		EFB2_01607	0.50	-1.8
1,682,405	+		EFB2_01607	0.50	+0.6
1,682,405	+		EFB2_01607	0.50	-0.9
1,682,405	+		EFB2_01607	0.50	+0.8
1,682,405	+		EFB2_01607	0.50	-0.0
1,682,405	+		EFB2_01607	0.50	+1.7
1,682,405	+		EFB2_01607	0.50	-0.3
1,682,405	+		EFB2_01607	0.50	+0.5
1,682,405	+		EFB2_01607	0.50	+0.1
1,682,405	+		EFB2_01607	0.50	+1.2
1,682,405	+		EFB2_01607	0.50	-0.5
1,682,406	-		EFB2_01607	0.50	+1.3
1,682,406	-		EFB2_01607	0.50	-0.5
1,682,406	-		EFB2_01607	0.50	+1.2
1,682,406	-		EFB2_01607	0.50	+0.9
1,682,406	-		EFB2_01607	0.50	-0.7
1,682,406	-		EFB2_01607	0.50	-3.0
1,682,406	-		EFB2_01607	0.50	+0.6
1,682,406	-		EFB2_01607	0.50	-1.2
1,682,406	-		EFB2_01607	0.50	-0.3
1,682,406	-		EFB2_01607	0.50	+1.7
1,682,423	+		EFB2_01607	0.51	-1.1
1,682,424	-		EFB2_01607	0.52	+0.0
1,682,424	-		EFB2_01607	0.52	+0.3
1,682,545	-		EFB2_01607	0.62	-0.3
1,682,545	-		EFB2_01607	0.62	+1.9
1,682,642	+		EFB2_01607	0.70	+1.3
1,682,642	+		EFB2_01607	0.70	+1.1
1,682,643	-		EFB2_01607	0.70	+1.7
1,682,739	+		EFB2_01607	0.78	-0.7
1,682,739	+		EFB2_01607	0.78	-1.6
1,682,740	-		EFB2_01607	0.78	-1.3
1,682,852	+		EFB2_01607	0.87	-0.4
1,682,852	+		EFB2_01607	0.87	+1.0
1,682,852	+		EFB2_01607	0.87	+3.1
1,682,852	+		EFB2_01607	0.87	+1.0
1,682,872	+		EFB2_01607	0.89	+1.1
1,682,873	-		EFB2_01607	0.89	-0.2
1,682,873	-		EFB2_01607	0.89	-0.3
1,682,883	+		EFB2_01607	0.90	+0.8
1,682,916	+				+2.3
1,682,916	+				-0.6
1,682,916	+				+1.2
1,682,916	+				-1.7
1,682,916	+				+0.2
1,682,916	+				-0.4
1,682,916	+				+0.0
1,682,917	-				-0.3
1,682,917	-				+1.0
1,682,917	-				-0.9
1,682,917	-				-2.2
1,682,917	-				-0.2
1,682,919	+				+0.7
1,682,919	+				-0.1
1,682,919	+				+0.2
1,682,919	+				-0.8
1,682,919	+				-0.1
1,682,919	+				+0.8
1,682,919	+				+0.6
1,682,919	+				-2.2
1,682,919	+				+0.4
1,682,919	+				+1.1
1,682,919	+				+0.8
1,682,919	+				-2.7
1,682,919	+				-0.0
1,682,919	+				+0.4
1,682,919	+				+0.7
1,682,919	+				+0.6
1,682,919	+				+0.8
1,682,919	+				+0.9
1,682,920	-				-1.6
1,682,920	-				+0.4
1,682,920	-				-1.7
1,682,920	-				+1.0
1,682,920	-				+0.9
1,682,920	-				+0.1
1,682,920	-				-1.0
1,682,920	-				-0.2
1,682,920	-				+1.0
1,682,920	-				-2.1
1,682,924	+				+0.1
1,682,924	+				+0.9
1,682,924	+				-1.7
1,682,924	+				-0.2
1,682,924	+				+0.4
1,682,924	+				-1.3
1,682,925	-				+0.3
1,682,996	+				-0.2
1,682,996	+				+0.2
1,682,996	+				+2.5
1,682,996	+				-0.3
1,682,997	-				+0.3
1,682,997	-				+0.4
1,682,997	-				+0.3
1,682,997	-				+1.4
1,682,997	-				+0.6
1,682,997	-				+0.3
1,682,998	+				-2.2
1,683,028	+				-0.9
1,683,029	-				+1.2
1,683,121	+				+0.8
1,683,121	+				+0.0
1,683,122	-				-0.5
1,683,174	+				+0.8
1,683,205	+				-0.5
1,683,206	-				+0.2
1,683,206	-				+0.2
1,683,209	+				-2.5
1,683,209	+				-0.1
1,683,209	+				+2.3
1,683,209	+				+0.8
1,683,209	+				+1.9
1,683,209	+				-0.6
1,683,209	+				-1.2
1,683,209	+				-0.1
1,683,209	+				-2.0
1,683,209	+				+1.3
1,683,209	+				-0.2
1,683,209	+				-2.2
1,683,210	-				+0.4
1,683,210	-				-0.3
1,683,210	-				+1.3
1,683,210	-				+0.9
1,683,210	-				-0.1
1,683,210	-				+0.3
1,683,210	-				+1.1
1,683,210	-				+1.0
1,683,210	-				-0.0
1,683,225	+				+0.3
1,683,225	+				-0.1
1,683,225	+				+0.4
1,683,225	+				+0.1
1,683,226	-				-0.5
1,683,226	-				-0.3
1,683,226	-				-2.2
1,683,264	+				+0.5
1,683,269	-				+0.5
1,683,271	-				-0.9
1,683,303	+				-0.3
1,683,339	+		EFB2_01608	0.14	+0.8
1,683,339	+		EFB2_01608	0.14	-0.2
1,683,340	-		EFB2_01608	0.15	+0.7
1,683,352	+		EFB2_01608	0.16	+1.4
1,683,352	+		EFB2_01608	0.16	-0.4
1,683,352	+		EFB2_01608	0.16	-0.4
1,683,352	+		EFB2_01608	0.16	-0.3
1,683,353	-		EFB2_01608	0.16	+0.6
1,683,353	-		EFB2_01608	0.16	+0.1
1,683,353	-		EFB2_01608	0.16	+1.3
1,683,353	-		EFB2_01608	0.16	+1.3
1,683,363	+		EFB2_01608	0.17	+0.1
1,683,363	+		EFB2_01608	0.17	-0.3
1,683,364	-		EFB2_01608	0.18	-0.6
1,683,364	-		EFB2_01608	0.18	-3.5
1,683,364	-		EFB2_01608	0.18	-0.8
1,683,364	-		EFB2_01608	0.18	+1.5
1,683,391	-		EFB2_01608	0.21	+0.2
1,683,455	+		EFB2_01608	0.29	+0.0
1,683,524	+		EFB2_01608	0.38	-0.2
1,683,524	+		EFB2_01608	0.38	-1.0
1,683,524	+		EFB2_01608	0.38	+0.3
1,683,524	+		EFB2_01608	0.38	-0.0
1,683,524	+		EFB2_01608	0.38	+0.1
1,683,524	+		EFB2_01608	0.38	+0.6
1,683,524	+		EFB2_01608	0.38	-1.5
1,683,524	+		EFB2_01608	0.38	-1.3
1,683,524	+		EFB2_01608	0.38	+0.3
1,683,524	+		EFB2_01608	0.38	-0.1
1,683,524	+		EFB2_01608	0.38	+0.5
1,683,524	+		EFB2_01608	0.38	-0.4
1,683,524	+		EFB2_01608	0.38	-1.9
1,683,524	+		EFB2_01608	0.38	-0.3
1,683,525	-		EFB2_01608	0.38	+0.4
1,683,525	-		EFB2_01608	0.38	-0.3
1,683,525	-		EFB2_01608	0.38	-1.2
1,683,525	-		EFB2_01608	0.38	-1.0
1,683,525	-		EFB2_01608	0.38	-0.5
1,683,525	-		EFB2_01608	0.38	-0.3
1,683,525	-		EFB2_01608	0.38	-2.2
1,683,525	-		EFB2_01608	0.38	-1.1
1,683,540	+		EFB2_01608	0.40	-1.4
1,683,540	+		EFB2_01608	0.40	-0.6
1,683,541	-		EFB2_01608	0.40	-0.7
1,683,541	-		EFB2_01608	0.40	-1.3
1,683,559	+		EFB2_01608	0.43	+0.7
1,683,559	+		EFB2_01608	0.43	-1.2
1,683,560	-		EFB2_01608	0.43	-1.5
1,683,560	-		EFB2_01608	0.43	-0.0
1,683,562	+		EFB2_01608	0.43	+1.8
1,683,562	+		EFB2_01608	0.43	-1.8
1,683,562	+		EFB2_01608	0.43	+1.6
1,683,562	+		EFB2_01608	0.43	-0.1
1,683,563	-		EFB2_01608	0.43	+0.2
1,683,563	-		EFB2_01608	0.43	-2.2
1,683,563	-		EFB2_01608	0.43	+3.0
1,683,563	-		EFB2_01608	0.43	-2.6
1,683,563	-		EFB2_01608	0.43	+1.2
1,683,563	-		EFB2_01608	0.43	-1.1
1,683,563	-		EFB2_01608	0.43	-0.1
1,683,563	-		EFB2_01608	0.43	-0.5
1,683,563	-		EFB2_01608	0.43	-0.5
1,683,592	-		EFB2_01608	0.47	+0.8
1,683,644	+		EFB2_01608	0.53	+0.8
1,683,648	+		EFB2_01608	0.54	-0.1
1,683,648	+		EFB2_01608	0.54	-2.2
1,683,648	+		EFB2_01608	0.54	-0.2
1,683,648	+		EFB2_01608	0.54	-2.6
1,683,648	+		EFB2_01608	0.54	+1.3
1,683,648	+		EFB2_01608	0.54	+0.9
1,683,648	+		EFB2_01608	0.54	-1.6
1,683,648	+		EFB2_01608	0.54	+1.0
1,683,648	+		EFB2_01608	0.54	+0.9
1,683,648	+		EFB2_01608	0.54	+0.3
1,683,649	-		EFB2_01608	0.54	-3.6
1,683,649	-		EFB2_01608	0.54	-0.3
1,683,649	-		EFB2_01608	0.54	+1.3
1,683,649	-		EFB2_01608	0.54	-2.6
1,683,649	-		EFB2_01608	0.54	-0.7
1,683,649	-		EFB2_01608	0.54	+0.5
1,683,649	-		EFB2_01608	0.54	+0.8
1,683,649	-		EFB2_01608	0.54	-3.0
1,683,649	-		EFB2_01608	0.54	+0.0
1,683,649	-		EFB2_01608	0.54	+1.3
1,683,649	-		EFB2_01608	0.54	-0.3
1,683,649	-		EFB2_01608	0.54	-1.5
1,683,649	-		EFB2_01608	0.54	+0.4
1,683,681	-		EFB2_01608	0.58	-0.1
1,683,681	-		EFB2_01608	0.58	+0.7
1,683,681	-		EFB2_01608	0.58	-0.6
1,683,681	-		EFB2_01608	0.58	+0.6
1,683,690	+		EFB2_01608	0.59	+2.5
1,683,690	+		EFB2_01608	0.59	-0.8
1,683,690	+		EFB2_01608	0.59	-1.0
1,683,691	-		EFB2_01608	0.59	+0.7
1,683,691	-		EFB2_01608	0.59	-2.4
1,683,691	-		EFB2_01608	0.59	-0.2
1,683,691	-		EFB2_01608	0.59	+1.6
1,683,691	-		EFB2_01608	0.59	+0.3
1,683,691	-		EFB2_01608	0.59	-2.8
1,683,691	-		EFB2_01608	0.59	-0.9
1,683,693	+		EFB2_01608	0.60	-1.1
1,683,735	+		EFB2_01608	0.65	-2.2
1,683,736	-		EFB2_01608	0.65	-0.3
1,683,771	+		EFB2_01608	0.70	+2.1
1,683,771	+		EFB2_01608	0.70	+1.8
1,683,793	+		EFB2_01608	0.72	+0.4
1,683,793	+		EFB2_01608	0.72	-2.2
1,683,793	+		EFB2_01608	0.72	-1.1
1,683,793	+		EFB2_01608	0.72	+0.6
1,683,793	+		EFB2_01608	0.72	-1.3
1,683,793	+		EFB2_01608	0.72	-1.5
1,683,793	+		EFB2_01608	0.72	-0.1
1,683,794	-		EFB2_01608	0.73	-0.2
1,683,794	-		EFB2_01608	0.73	-1.4
1,683,794	-		EFB2_01608	0.73	-0.7
1,683,811	+		EFB2_01608	0.75	-1.1
1,683,811	+		EFB2_01608	0.75	-0.1
1,683,864	+		EFB2_01608	0.81	+0.7
1,683,864	+		EFB2_01608	0.81	+1.6
1,683,864	+		EFB2_01608	0.81	-0.6
1,683,864	+		EFB2_01608	0.81	-0.9
1,683,865	-		EFB2_01608	0.82	-1.5
1,683,865	-		EFB2_01608	0.82	+0.1
1,683,865	-		EFB2_01608	0.82	-0.4
1,683,896	+		EFB2_01608	0.86	+0.4
1,683,913	+		EFB2_01608	0.88	-1.4
1,683,913	+		EFB2_01608	0.88	-0.5
1,683,913	+		EFB2_01608	0.88	+0.3
1,683,913	+		EFB2_01608	0.88	+3.1
1,683,914	-		EFB2_01608	0.88	-1.6
1,683,922	+		EFB2_01608	0.89	-0.4
1,683,922	+		EFB2_01608	0.89	+0.5
1,683,922	+		EFB2_01608	0.89	-0.3
1,683,923	-		EFB2_01608	0.89	-0.6
1,683,923	-		EFB2_01608	0.89	-1.5
1,683,923	-		EFB2_01608	0.89	-0.0
1,683,923	-		EFB2_01608	0.89	+0.4
1,683,957	+				+2.3
1,683,957	+				+0.6
1,683,957	+				-0.3
1,683,957	+				-0.7
1,683,958	-				+0.5
1,683,958	-				-2.7
1,683,995	+				+0.8
1,683,996	-				+1.3
1,683,996	-				+1.1
1,683,996	-				+0.4
1,684,006	+				+2.4
1,684,006	+				+1.2
1,684,007	-				-0.2
1,684,031	-				-0.0
1,684,105	-				-2.3
1,684,105	-				-0.3
1,684,142	+				+1.6
1,684,142	+				+0.3
1,684,142	+				+0.4
1,684,143	-				+0.1
1,684,143	-				+0.5
1,684,160	+		EFB2_01609	0.11	+0.6
1,684,160	+		EFB2_01609	0.11	-2.4
1,684,160	+		EFB2_01609	0.11	-1.5
1,684,160	+		EFB2_01609	0.11	+0.7
1,684,160	+		EFB2_01609	0.11	+0.2
1,684,160	+		EFB2_01609	0.11	+0.0
1,684,161	-		EFB2_01609	0.11	+0.9
1,684,161	-		EFB2_01609	0.11	-2.7
1,684,161	-		EFB2_01609	0.11	-0.0
1,684,161	-		EFB2_01609	0.11	-0.3
1,684,161	-		EFB2_01609	0.11	+2.3
1,684,161	-		EFB2_01609	0.11	-1.4
1,684,164	+		EFB2_01609	0.12	-1.6
1,684,165	-		EFB2_01609	0.12	+0.0
1,684,165	-		EFB2_01609	0.12	+0.6
1,684,173	+		EFB2_01609	0.12	-1.5
1,684,198	+		EFB2_01609	0.15	+1.4
1,684,200	-		EFB2_01609	0.15	+0.0
1,684,200	-		EFB2_01609	0.15	-0.0
1,684,200	-		EFB2_01609	0.15	+0.7
1,684,202	+		EFB2_01609	0.15	+0.4
1,684,202	+		EFB2_01609	0.15	-1.4
1,684,293	-		EFB2_01609	0.22	+0.3
1,684,310	+		EFB2_01609	0.24	-2.1
1,684,310	+		EFB2_01609	0.24	-0.9
1,684,311	-		EFB2_01609	0.24	-2.9
1,684,328	+		EFB2_01609	0.25	+0.9
1,684,329	-		EFB2_01609	0.25	+0.4
1,684,383	+		EFB2_01609	0.30	+1.2
1,684,383	+		EFB2_01609	0.30	-1.5
1,684,383	+		EFB2_01609	0.30	-0.2
1,684,384	-		EFB2_01609	0.30	-0.0
1,684,384	-		EFB2_01609	0.30	-0.0
1,684,384	-		EFB2_01609	0.30	+1.6
1,684,386	+		EFB2_01609	0.30	+0.0
1,684,386	+		EFB2_01609	0.30	-1.4
1,684,386	+		EFB2_01609	0.30	-0.5
1,684,386	+		EFB2_01609	0.30	+1.1
1,684,386	+		EFB2_01609	0.30	-0.4
1,684,387	-		EFB2_01609	0.30	+0.8
1,684,387	-		EFB2_01609	0.30	+0.3
1,684,387	-		EFB2_01609	0.30	+1.2
1,684,416	-		EFB2_01609	0.33	-0.4
1,684,416	-		EFB2_01609	0.33	-1.7
1,684,479	+		EFB2_01609	0.38	-2.2
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