Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.2 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS19920 and COO64_RS19925 are separated by 59 nucleotides COO64_RS19925 and recA are separated by 102 nucleotides recA and recX are separated by 8 nucleotides recX and COO64_RS19940 are separated by 2 nucleotides
COO64_RS19920: COO64_RS19920 - lysis system i-spanin subunit Rz, at 91,417 to 91,917
_RS19920
COO64_RS19925: COO64_RS19925 - CinA family protein, at 91,977 to 92,459
_RS19925
COO64_RS19930: recA - recombinase RecA, at 92,562 to 93,629
recA
COO64_RS19935: recX - recombination regulator RecX, at 93,638 to 94,105
recX
COO64_RS19940: COO64_RS19940 - LOG family protein, at 94,108 to 95,226
_RS19940
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1 at 91.642 kb on + strand, within COO64_RS19920 at 91.642 kb on + strand, within COO64_RS19920 at 91.642 kb on + strand, within COO64_RS19920 at 91.642 kb on + strand, within COO64_RS19920 at 91.642 kb on + strand, within COO64_RS19920 at 91.643 kb on - strand, within COO64_RS19920 at 91.643 kb on - strand, within COO64_RS19920 at 91.643 kb on - strand, within COO64_RS19920 at 91.643 kb on - strand, within COO64_RS19920 at 91.643 kb on - strand, within COO64_RS19920 at 91.652 kb on + strand, within COO64_RS19920 at 91.652 kb on + strand, within COO64_RS19920 at 91.652 kb on + strand, within COO64_RS19920 at 91.652 kb on + strand, within COO64_RS19920 at 91.653 kb on - strand, within COO64_RS19920 at 91.799 kb on + strand, within COO64_RS19920 at 91.894 kb on + strand at 91.894 kb on + strand at 91.894 kb on + strand at 91.894 kb on + strand at 91.894 kb on + strand at 91.894 kb on + strand at 91.895 kb on - strand at 91.895 kb on - strand at 91.895 kb on - strand at 91.895 kb on - strand at 91.895 kb on - strand at 91.895 kb on - strand at 91.895 kb on - strand at 91.895 kb on - strand at 91.895 kb on - strand at 91.895 kb on - strand at 91.925 kb on + strand at 91.926 kb on - strand at 91.926 kb on - strand at 91.926 kb on - strand at 91.926 kb on - strand at 91.944 kb on + strand at 91.944 kb on + strand at 91.944 kb on + strand at 91.944 kb on + strand at 91.945 kb on - strand at 91.945 kb on - strand at 91.945 kb on - strand at 92.085 kb on - strand, within COO64_RS19925 at 92.128 kb on - strand, within COO64_RS19925 at 92.136 kb on + strand, within COO64_RS19925 at 92.136 kb on + strand, within COO64_RS19925 at 92.137 kb on - strand, within COO64_RS19925 at 92.329 kb on + strand, within COO64_RS19925 at 92.330 kb on - strand, within COO64_RS19925 at 92.330 kb on - strand, within COO64_RS19925 at 92.401 kb on + strand, within COO64_RS19925 at 92.416 kb on + strand at 92.429 kb on - strand at 92.440 kb on + strand at 92.441 kb on - strand at 92.441 kb on - strand at 92.441 kb on - strand at 92.441 kb on - strand at 92.441 kb on - strand at 92.509 kb on + strand at 92.513 kb on + strand at 92.514 kb on - strand at 92.514 kb on - strand at 92.547 kb on + strand at 92.547 kb on + strand at 92.547 kb on + strand at 92.548 kb on - strand at 92.752 kb on - strand, within recA at 92.771 kb on + strand, within recA at 92.822 kb on + strand, within recA at 92.822 kb on + strand, within recA at 92.865 kb on + strand, within recA at 92.865 kb on + strand, within recA at 93.086 kb on + strand, within recA at 93.194 kb on + strand, within recA at 93.210 kb on + strand, within recA at 93.210 kb on + strand, within recA at 93.210 kb on + strand, within recA at 93.210 kb on + strand, within recA at 93.210 kb on + strand, within recA at 93.210 kb on + strand, within recA at 93.211 kb on - strand, within recA at 93.211 kb on - strand, within recA at 93.211 kb on - strand, within recA at 93.211 kb on - strand, within recA at 93.211 kb on - strand, within recA at 93.211 kb on - strand, within recA at 93.211 kb on - strand, within recA at 93.211 kb on - strand, within recA at 93.211 kb on - strand, within recA at 93.348 kb on + strand, within recA at 93.348 kb on + strand, within recA at 93.363 kb on + strand, within recA at 93.364 kb on - strand, within recA at 93.429 kb on + strand, within recA at 93.430 kb on - strand, within recA at 93.435 kb on + strand, within recA at 93.435 kb on + strand, within recA at 93.436 kb on - strand, within recA at 93.580 kb on + strand at 93.624 kb on + strand at 93.858 kb on - strand, within recX at 93.871 kb on + strand, within recX at 93.871 kb on + strand, within recX at 93.872 kb on - strand, within recX at 94.080 kb on + strand at 94.109 kb on + strand at 94.109 kb on + strand at 94.109 kb on + strand at 94.110 kb on - strand at 94.110 kb on - strand at 94.110 kb on - strand at 94.110 kb on - strand at 94.110 kb on - strand at 94.113 kb on + strand at 94.190 kb on + strand at 94.190 kb on + strand at 94.190 kb on + strand at 94.190 kb on + strand at 94.190 kb on + strand at 94.190 kb on + strand at 94.191 kb on - strand at 94.191 kb on - strand at 94.191 kb on - strand at 94.191 kb on - strand at 94.191 kb on - strand at 94.424 kb on + strand, within COO64_RS19940 at 94.424 kb on + strand, within COO64_RS19940 at 94.424 kb on + strand, within COO64_RS19940 at 94.425 kb on - strand, within COO64_RS19940 at 94.425 kb on - strand, within COO64_RS19940 at 94.425 kb on - strand, within COO64_RS19940 at 94.425 kb on - strand, within COO64_RS19940 at 94.425 kb on - strand, within COO64_RS19940 at 94.425 kb on - strand, within COO64_RS19940 at 94.425 kb on - strand, within COO64_RS19940 at 94.433 kb on + strand, within COO64_RS19940 at 94.433 kb on + strand, within COO64_RS19940 at 94.433 kb on + strand, within COO64_RS19940 at 94.434 kb on - strand, within COO64_RS19940 at 94.434 kb on - strand, within COO64_RS19940 at 94.434 kb on - strand, within COO64_RS19940 at 94.434 kb on - strand, within COO64_RS19940 at 94.472 kb on + strand, within COO64_RS19940 at 94.472 kb on + strand, within COO64_RS19940 at 94.473 kb on - strand, within COO64_RS19940 at 94.473 kb on - strand, within COO64_RS19940 at 94.473 kb on - strand, within COO64_RS19940 at 94.483 kb on + strand, within COO64_RS19940 at 94.484 kb on - strand, within COO64_RS19940 at 94.484 kb on - strand, within COO64_RS19940 at 94.484 kb on - strand, within COO64_RS19940 at 94.495 kb on - strand, within COO64_RS19940 at 94.511 kb on + strand, within COO64_RS19940 at 94.511 kb on + strand, within COO64_RS19940 at 94.511 kb on + strand, within COO64_RS19940 at 94.512 kb on - strand, within COO64_RS19940 at 94.512 kb on - strand, within COO64_RS19940
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.2 X remove 91,642 + COO64_RS19920 0.45 +0.4 91,642 + COO64_RS19920 0.45 -1.0 91,642 + COO64_RS19920 0.45 -0.9 91,642 + COO64_RS19920 0.45 -0.6 91,642 + COO64_RS19920 0.45 -0.3 91,643 - COO64_RS19920 0.45 +0.4 91,643 - COO64_RS19920 0.45 -0.3 91,643 - COO64_RS19920 0.45 -1.0 91,643 - COO64_RS19920 0.45 +0.3 91,643 - COO64_RS19920 0.45 +0.6 91,652 + COO64_RS19920 0.47 -0.4 91,652 + COO64_RS19920 0.47 +0.4 91,652 + COO64_RS19920 0.47 -0.3 91,652 + COO64_RS19920 0.47 +0.7 91,653 - COO64_RS19920 0.47 +0.1 91,799 + COO64_RS19920 0.76 -0.4 91,894 + -0.5 91,894 + -1.1 91,894 + -0.4 91,894 + +0.3 91,894 + +0.9 91,894 + +0.1 91,895 - -0.6 91,895 - -1.4 91,895 - +0.9 91,895 - +0.2 91,895 - +0.4 91,895 - -0.6 91,895 - +0.4 91,895 - +0.3 91,895 - +1.1 91,895 - +0.0 91,925 + -1.1 91,926 - -1.9 91,926 - +0.7 91,926 - -0.3 91,926 - -1.6 91,944 + -0.3 91,944 + -0.7 91,944 + -0.5 91,944 + +0.1 91,945 - +0.4 91,945 - +0.8 91,945 - +0.4 92,085 - COO64_RS19925 0.22 -0.2 92,128 - COO64_RS19925 0.31 +0.9 92,136 + COO64_RS19925 0.33 -0.4 92,136 + COO64_RS19925 0.33 +0.2 92,137 - COO64_RS19925 0.33 -1.5 92,329 + COO64_RS19925 0.73 -1.0 92,330 - COO64_RS19925 0.73 +0.1 92,330 - COO64_RS19925 0.73 +0.9 92,401 + COO64_RS19925 0.88 -1.0 92,416 + -0.9 92,429 - -0.3 92,440 + +0.0 92,441 - -0.4 92,441 - -1.4 92,441 - -0.2 92,441 - +0.9 92,441 - +0.5 92,509 + +1.3 92,513 + -0.8 92,514 - -0.4 92,514 - -0.0 92,547 + +1.0 92,547 + -1.5 92,547 + +0.8 92,548 - +0.1 92,752 - recA COO64_RS19930 0.18 -0.4 92,771 + recA COO64_RS19930 0.20 -1.6 92,822 + recA COO64_RS19930 0.24 +0.1 92,822 + recA COO64_RS19930 0.24 +0.3 92,865 + recA COO64_RS19930 0.28 -0.0 92,865 + recA COO64_RS19930 0.28 -0.2 93,086 + recA COO64_RS19930 0.49 +1.1 93,194 + recA COO64_RS19930 0.59 +0.1 93,210 + recA COO64_RS19930 0.61 -0.8 93,210 + recA COO64_RS19930 0.61 +0.3 93,210 + recA COO64_RS19930 0.61 -0.4 93,210 + recA COO64_RS19930 0.61 -0.3 93,210 + recA COO64_RS19930 0.61 -0.7 93,210 + recA COO64_RS19930 0.61 -0.3 93,211 - recA COO64_RS19930 0.61 +0.3 93,211 - recA COO64_RS19930 0.61 -2.5 93,211 - recA COO64_RS19930 0.61 +0.8 93,211 - recA COO64_RS19930 0.61 +0.6 93,211 - recA COO64_RS19930 0.61 +1.1 93,211 - recA COO64_RS19930 0.61 -1.8 93,211 - recA COO64_RS19930 0.61 -0.2 93,211 - recA COO64_RS19930 0.61 -0.9 93,211 - recA COO64_RS19930 0.61 -1.3 93,348 + recA COO64_RS19930 0.74 -0.9 93,348 + recA COO64_RS19930 0.74 +1.1 93,363 + recA COO64_RS19930 0.75 -1.4 93,364 - recA COO64_RS19930 0.75 -0.4 93,429 + recA COO64_RS19930 0.81 -0.4 93,430 - recA COO64_RS19930 0.81 -2.2 93,435 + recA COO64_RS19930 0.82 -1.2 93,435 + recA COO64_RS19930 0.82 +0.1 93,436 - recA COO64_RS19930 0.82 +0.1 93,580 + -1.8 93,624 + +1.3 93,858 - recX COO64_RS19935 0.47 +0.3 93,871 + recX COO64_RS19935 0.50 +0.4 93,871 + recX COO64_RS19935 0.50 -0.9 93,872 - recX COO64_RS19935 0.50 +0.2 94,080 + +1.2 94,109 + -0.6 94,109 + +0.7 94,109 + +0.1 94,110 - -0.9 94,110 - +1.3 94,110 - +0.8 94,110 - +1.3 94,110 - -0.1 94,113 + +0.3 94,190 + -0.9 94,190 + -0.6 94,190 + -1.0 94,190 + +1.3 94,190 + +0.1 94,190 + +0.1 94,191 - +0.3 94,191 - -0.5 94,191 - -1.3 94,191 - +1.4 94,191 - -0.7 94,424 + COO64_RS19940 0.28 -0.4 94,424 + COO64_RS19940 0.28 -0.7 94,424 + COO64_RS19940 0.28 +0.3 94,425 - COO64_RS19940 0.28 -1.4 94,425 - COO64_RS19940 0.28 -0.7 94,425 - COO64_RS19940 0.28 -0.5 94,425 - COO64_RS19940 0.28 -0.2 94,425 - COO64_RS19940 0.28 -0.9 94,425 - COO64_RS19940 0.28 -2.6 94,425 - COO64_RS19940 0.28 -1.2 94,433 + COO64_RS19940 0.29 +0.8 94,433 + COO64_RS19940 0.29 +0.4 94,433 + COO64_RS19940 0.29 -0.6 94,434 - COO64_RS19940 0.29 -0.2 94,434 - COO64_RS19940 0.29 -0.2 94,434 - COO64_RS19940 0.29 +0.0 94,434 - COO64_RS19940 0.29 +0.7 94,472 + COO64_RS19940 0.33 +0.8 94,472 + COO64_RS19940 0.33 -1.1 94,473 - COO64_RS19940 0.33 -1.5 94,473 - COO64_RS19940 0.33 +0.2 94,473 - COO64_RS19940 0.33 -1.4 94,483 + COO64_RS19940 0.34 +0.1 94,484 - COO64_RS19940 0.34 +0.2 94,484 - COO64_RS19940 0.34 -0.1 94,484 - COO64_RS19940 0.34 -0.2 94,495 - COO64_RS19940 0.35 +0.3 94,511 + COO64_RS19940 0.36 -0.1 94,511 + COO64_RS19940 0.36 +0.6 94,511 + COO64_RS19940 0.36 -0.0 94,512 - COO64_RS19940 0.36 -0.8 94,512 - COO64_RS19940 0.36 -0.5
Or see this region's nucleotide sequence