Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.2 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS03415 and COO64_RS03420 are separated by 118 nucleotides COO64_RS03420 and COO64_RS03425 are separated by 71 nucleotides
COO64_RS03415: COO64_RS03415 - LuxR C-terminal-related transcriptional regulator, at 158,970 to 161,690
_RS03415
COO64_RS03420: COO64_RS03420 - sigma-54-dependent Fis family transcriptional regulator, at 161,809 to 163,713
_RS03420
COO64_RS03425: COO64_RS03425 - aldehyde dehydrogenase, at 163,785 to 165,278
_RS03425
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -2
-1
0
1 at 160.861 kb on + strand, within COO64_RS03415 at 160.862 kb on - strand, within COO64_RS03415 at 161.079 kb on + strand, within COO64_RS03415 at 161.079 kb on + strand, within COO64_RS03415 at 161.080 kb on - strand, within COO64_RS03415 at 161.080 kb on - strand, within COO64_RS03415 at 161.080 kb on - strand, within COO64_RS03415 at 161.080 kb on - strand, within COO64_RS03415 at 161.295 kb on - strand, within COO64_RS03415 at 161.688 kb on + strand at 161.688 kb on + strand at 161.689 kb on - strand at 161.727 kb on + strand at 161.727 kb on + strand at 161.728 kb on - strand at 161.728 kb on - strand at 161.850 kb on + strand at 161.851 kb on - strand at 161.851 kb on - strand at 161.859 kb on - strand at 161.870 kb on + strand at 161.871 kb on - strand at 162.011 kb on + strand, within COO64_RS03420 at 162.061 kb on + strand, within COO64_RS03420 at 162.061 kb on + strand, within COO64_RS03420 at 162.061 kb on + strand, within COO64_RS03420 at 162.061 kb on + strand, within COO64_RS03420 at 162.062 kb on - strand, within COO64_RS03420 at 162.062 kb on - strand, within COO64_RS03420 at 162.299 kb on - strand, within COO64_RS03420 at 162.455 kb on - strand, within COO64_RS03420 at 162.455 kb on - strand, within COO64_RS03420 at 162.496 kb on + strand, within COO64_RS03420 at 162.546 kb on + strand, within COO64_RS03420 at 162.546 kb on + strand, within COO64_RS03420 at 162.712 kb on + strand, within COO64_RS03420 at 162.713 kb on - strand, within COO64_RS03420 at 162.713 kb on - strand, within COO64_RS03420 at 163.095 kb on + strand, within COO64_RS03420 at 163.122 kb on + strand, within COO64_RS03420 at 163.288 kb on + strand, within COO64_RS03420 at 163.288 kb on + strand, within COO64_RS03420 at 163.293 kb on + strand, within COO64_RS03420 at 163.430 kb on - strand, within COO64_RS03420 at 163.787 kb on - strand at 163.819 kb on + strand at 163.819 kb on + strand at 163.820 kb on - strand at 163.920 kb on + strand at 164.000 kb on - strand, within COO64_RS03425 at 164.085 kb on + strand, within COO64_RS03425 at 164.086 kb on - strand, within COO64_RS03425 at 164.086 kb on - strand, within COO64_RS03425 at 164.137 kb on + strand, within COO64_RS03425 at 164.138 kb on - strand, within COO64_RS03425 at 164.203 kb on + strand, within COO64_RS03425 at 164.204 kb on - strand, within COO64_RS03425 at 164.204 kb on - strand, within COO64_RS03425 at 164.204 kb on - strand, within COO64_RS03425 at 164.204 kb on - strand, within COO64_RS03425 at 164.204 kb on - strand, within COO64_RS03425 at 164.209 kb on + strand, within COO64_RS03425 at 164.210 kb on - strand, within COO64_RS03425 at 164.210 kb on - strand, within COO64_RS03425 at 164.340 kb on + strand, within COO64_RS03425 at 164.340 kb on + strand, within COO64_RS03425 at 164.340 kb on + strand, within COO64_RS03425 at 164.340 kb on + strand, within COO64_RS03425 at 164.340 kb on + strand, within COO64_RS03425 at 164.340 kb on + strand, within COO64_RS03425 at 164.341 kb on - strand, within COO64_RS03425 at 164.341 kb on - strand, within COO64_RS03425 at 164.341 kb on - strand, within COO64_RS03425 at 164.341 kb on - strand, within COO64_RS03425 at 164.344 kb on + strand, within COO64_RS03425 at 164.344 kb on + strand, within COO64_RS03425 at 164.345 kb on - strand, within COO64_RS03425 at 164.345 kb on - strand, within COO64_RS03425 at 164.345 kb on - strand, within COO64_RS03425 at 164.345 kb on - strand, within COO64_RS03425 at 164.345 kb on - strand, within COO64_RS03425 at 164.345 kb on - strand, within COO64_RS03425 at 164.644 kb on - strand, within COO64_RS03425
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.2 X remove 160,861 + COO64_RS03415 0.69 +0.2 160,862 - COO64_RS03415 0.70 -0.4 161,079 + COO64_RS03415 0.78 -0.8 161,079 + COO64_RS03415 0.78 +0.1 161,080 - COO64_RS03415 0.78 +1.0 161,080 - COO64_RS03415 0.78 -1.1 161,080 - COO64_RS03415 0.78 +0.3 161,080 - COO64_RS03415 0.78 -0.4 161,295 - COO64_RS03415 0.85 +1.1 161,688 + -0.3 161,688 + +0.4 161,689 - -0.5 161,727 + +1.1 161,727 + +0.1 161,728 - +0.1 161,728 - -0.5 161,850 + -0.9 161,851 - -1.2 161,851 - -0.3 161,859 - -0.8 161,870 + -0.3 161,871 - +0.1 162,011 + COO64_RS03420 0.11 +0.3 162,061 + COO64_RS03420 0.13 +0.7 162,061 + COO64_RS03420 0.13 +0.7 162,061 + COO64_RS03420 0.13 -0.2 162,061 + COO64_RS03420 0.13 -0.9 162,062 - COO64_RS03420 0.13 +0.3 162,062 - COO64_RS03420 0.13 -0.4 162,299 - COO64_RS03420 0.26 +1.1 162,455 - COO64_RS03420 0.34 -0.8 162,455 - COO64_RS03420 0.34 +0.7 162,496 + COO64_RS03420 0.36 +1.2 162,546 + COO64_RS03420 0.39 +0.4 162,546 + COO64_RS03420 0.39 +0.1 162,712 + COO64_RS03420 0.47 -1.0 162,713 - COO64_RS03420 0.47 +0.5 162,713 - COO64_RS03420 0.47 +0.9 163,095 + COO64_RS03420 0.68 -0.6 163,122 + COO64_RS03420 0.69 -1.2 163,288 + COO64_RS03420 0.78 +0.1 163,288 + COO64_RS03420 0.78 -0.3 163,293 + COO64_RS03420 0.78 +0.0 163,430 - COO64_RS03420 0.85 -0.6 163,787 - -0.6 163,819 + +0.0 163,819 + -1.4 163,820 - -0.5 163,920 + +0.1 164,000 - COO64_RS03425 0.14 -0.5 164,085 + COO64_RS03425 0.20 -0.9 164,086 - COO64_RS03425 0.20 +0.3 164,086 - COO64_RS03425 0.20 -1.2 164,137 + COO64_RS03425 0.24 -0.8 164,138 - COO64_RS03425 0.24 -0.3 164,203 + COO64_RS03425 0.28 -0.2 164,204 - COO64_RS03425 0.28 -0.8 164,204 - COO64_RS03425 0.28 -0.5 164,204 - COO64_RS03425 0.28 -0.2 164,204 - COO64_RS03425 0.28 -0.4 164,204 - COO64_RS03425 0.28 +0.1 164,209 + COO64_RS03425 0.28 -0.1 164,210 - COO64_RS03425 0.28 -0.5 164,210 - COO64_RS03425 0.28 +0.1 164,340 + COO64_RS03425 0.37 +0.5 164,340 + COO64_RS03425 0.37 +0.7 164,340 + COO64_RS03425 0.37 -2.0 164,340 + COO64_RS03425 0.37 -2.0 164,340 + COO64_RS03425 0.37 +0.7 164,340 + COO64_RS03425 0.37 -0.2 164,341 - COO64_RS03425 0.37 +0.6 164,341 - COO64_RS03425 0.37 +0.5 164,341 - COO64_RS03425 0.37 -0.8 164,341 - COO64_RS03425 0.37 +1.2 164,344 + COO64_RS03425 0.37 +0.4 164,344 + COO64_RS03425 0.37 -1.0 164,345 - COO64_RS03425 0.37 +0.5 164,345 - COO64_RS03425 0.37 -0.9 164,345 - COO64_RS03425 0.37 -0.9 164,345 - COO64_RS03425 0.37 +0.8 164,345 - COO64_RS03425 0.37 +0.5 164,345 - COO64_RS03425 0.37 -0.0 164,644 - COO64_RS03425 0.57 -0.9
Or see this region's nucleotide sequence