Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04921 and BACOVA_04922 are separated by 25 nucleotides BACOVA_04922 and BACOVA_04923 are separated by 20 nucleotides
BACOVA_04921: BACOVA_04921 - TonB-linked outer membrane protein, SusC/RagA family, at 331,027 to 334,242
_04921
BACOVA_04922: BACOVA_04922 - SusD family protein, at 334,268 to 336,169
_04922
BACOVA_04923: BACOVA_04923 - hypothetical protein, at 336,190 to 337,842
_04923
Position (kb) 334
335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 333.269 kb on + strand, within BACOVA_04921 at 333.346 kb on + strand, within BACOVA_04921 at 333.360 kb on + strand, within BACOVA_04921 at 333.433 kb on + strand, within BACOVA_04921 at 333.434 kb on - strand, within BACOVA_04921 at 333.453 kb on + strand, within BACOVA_04921 at 333.469 kb on + strand, within BACOVA_04921 at 333.493 kb on + strand, within BACOVA_04921 at 333.561 kb on - strand, within BACOVA_04921 at 333.679 kb on - strand, within BACOVA_04921 at 333.730 kb on + strand, within BACOVA_04921 at 333.730 kb on + strand, within BACOVA_04921 at 333.731 kb on - strand, within BACOVA_04921 at 333.731 kb on - strand, within BACOVA_04921 at 333.732 kb on + strand, within BACOVA_04921 at 333.733 kb on - strand, within BACOVA_04921 at 333.765 kb on + strand, within BACOVA_04921 at 333.765 kb on + strand, within BACOVA_04921 at 333.766 kb on - strand, within BACOVA_04921 at 333.861 kb on + strand, within BACOVA_04921 at 333.874 kb on - strand, within BACOVA_04921 at 333.905 kb on - strand, within BACOVA_04921 at 333.981 kb on + strand at 333.981 kb on + strand at 333.989 kb on - strand at 333.989 kb on - strand at 334.093 kb on + strand at 334.098 kb on - strand at 334.098 kb on - strand at 334.132 kb on - strand at 334.187 kb on - strand at 334.210 kb on - strand at 334.213 kb on + strand at 334.215 kb on + strand at 334.274 kb on - strand at 334.281 kb on + strand at 334.282 kb on - strand at 334.287 kb on - strand at 334.307 kb on - strand at 334.377 kb on + strand at 334.377 kb on + strand at 334.422 kb on - strand at 334.526 kb on - strand, within BACOVA_04922 at 334.542 kb on + strand, within BACOVA_04922 at 334.542 kb on + strand, within BACOVA_04922 at 334.597 kb on + strand, within BACOVA_04922 at 334.597 kb on + strand, within BACOVA_04922 at 334.598 kb on - strand, within BACOVA_04922 at 334.617 kb on - strand, within BACOVA_04922 at 334.671 kb on + strand, within BACOVA_04922 at 334.706 kb on + strand, within BACOVA_04922 at 334.707 kb on - strand, within BACOVA_04922 at 334.707 kb on - strand, within BACOVA_04922 at 334.740 kb on - strand, within BACOVA_04922 at 334.770 kb on + strand, within BACOVA_04922 at 334.771 kb on - strand, within BACOVA_04922 at 334.869 kb on + strand, within BACOVA_04922 at 334.869 kb on + strand, within BACOVA_04922 at 334.870 kb on - strand, within BACOVA_04922 at 334.870 kb on - strand, within BACOVA_04922 at 334.875 kb on + strand, within BACOVA_04922 at 334.876 kb on - strand, within BACOVA_04922 at 334.876 kb on - strand, within BACOVA_04922 at 334.876 kb on - strand, within BACOVA_04922 at 334.892 kb on + strand, within BACOVA_04922 at 334.892 kb on + strand, within BACOVA_04922 at 334.937 kb on + strand, within BACOVA_04922 at 335.055 kb on - strand, within BACOVA_04922 at 335.057 kb on + strand, within BACOVA_04922 at 335.076 kb on - strand, within BACOVA_04922 at 335.089 kb on - strand, within BACOVA_04922 at 335.149 kb on + strand, within BACOVA_04922 at 335.226 kb on - strand, within BACOVA_04922 at 335.227 kb on + strand, within BACOVA_04922 at 335.227 kb on + strand, within BACOVA_04922 at 335.227 kb on + strand, within BACOVA_04922 at 335.228 kb on - strand, within BACOVA_04922 at 335.230 kb on + strand, within BACOVA_04922 at 335.231 kb on - strand, within BACOVA_04922 at 335.282 kb on + strand, within BACOVA_04922 at 335.283 kb on - strand, within BACOVA_04922 at 335.283 kb on - strand, within BACOVA_04922 at 335.283 kb on - strand, within BACOVA_04922 at 335.286 kb on + strand, within BACOVA_04922 at 335.303 kb on + strand, within BACOVA_04922 at 335.310 kb on - strand, within BACOVA_04922 at 335.341 kb on + strand, within BACOVA_04922 at 335.360 kb on - strand, within BACOVA_04922 at 335.360 kb on - strand, within BACOVA_04922 at 335.435 kb on + strand, within BACOVA_04922 at 335.437 kb on + strand, within BACOVA_04922 at 335.437 kb on + strand, within BACOVA_04922 at 335.438 kb on - strand, within BACOVA_04922 at 335.438 kb on - strand, within BACOVA_04922 at 335.470 kb on + strand, within BACOVA_04922 at 335.471 kb on - strand, within BACOVA_04922 at 335.471 kb on - strand, within BACOVA_04922 at 335.473 kb on + strand, within BACOVA_04922 at 335.480 kb on - strand, within BACOVA_04922 at 335.490 kb on + strand, within BACOVA_04922 at 335.491 kb on - strand, within BACOVA_04922 at 335.491 kb on - strand, within BACOVA_04922 at 335.522 kb on + strand, within BACOVA_04922 at 335.522 kb on + strand, within BACOVA_04922 at 335.522 kb on + strand, within BACOVA_04922 at 335.523 kb on - strand, within BACOVA_04922 at 335.623 kb on + strand, within BACOVA_04922 at 335.624 kb on - strand, within BACOVA_04922 at 335.628 kb on + strand, within BACOVA_04922 at 335.654 kb on - strand, within BACOVA_04922 at 335.693 kb on - strand, within BACOVA_04922 at 335.717 kb on - strand, within BACOVA_04922 at 335.726 kb on + strand, within BACOVA_04922 at 335.746 kb on + strand, within BACOVA_04922 at 335.750 kb on + strand, within BACOVA_04922 at 335.761 kb on + strand, within BACOVA_04922 at 335.766 kb on - strand, within BACOVA_04922 at 335.775 kb on - strand, within BACOVA_04922 at 335.775 kb on - strand, within BACOVA_04922 at 335.817 kb on - strand, within BACOVA_04922 at 335.846 kb on - strand, within BACOVA_04922 at 335.846 kb on - strand, within BACOVA_04922 at 335.848 kb on + strand, within BACOVA_04922 at 335.853 kb on - strand, within BACOVA_04922 at 335.899 kb on - strand, within BACOVA_04922 at 335.911 kb on + strand, within BACOVA_04922 at 335.912 kb on - strand, within BACOVA_04922 at 335.921 kb on + strand, within BACOVA_04922 at 335.951 kb on + strand, within BACOVA_04922 at 336.026 kb on - strand at 336.049 kb on + strand at 336.050 kb on - strand at 336.082 kb on + strand at 336.126 kb on + strand at 336.155 kb on + strand at 336.156 kb on - strand at 336.190 kb on - strand at 336.276 kb on + strand at 336.277 kb on - strand at 336.317 kb on + strand at 336.364 kb on + strand, within BACOVA_04923 at 336.364 kb on + strand, within BACOVA_04923 at 336.457 kb on + strand, within BACOVA_04923 at 336.475 kb on - strand, within BACOVA_04923 at 336.497 kb on - strand, within BACOVA_04923 at 336.551 kb on - strand, within BACOVA_04923 at 336.678 kb on + strand, within BACOVA_04923 at 336.679 kb on - strand, within BACOVA_04923 at 336.681 kb on + strand, within BACOVA_04923 at 336.681 kb on + strand, within BACOVA_04923 at 336.681 kb on + strand, within BACOVA_04923 at 336.682 kb on - strand, within BACOVA_04923 at 336.682 kb on - strand, within BACOVA_04923 at 336.682 kb on - strand, within BACOVA_04923 at 336.683 kb on + strand, within BACOVA_04923 at 336.683 kb on + strand, within BACOVA_04923 at 336.684 kb on - strand, within BACOVA_04923 at 336.697 kb on - strand, within BACOVA_04923 at 336.724 kb on - strand, within BACOVA_04923 at 336.789 kb on + strand, within BACOVA_04923 at 336.789 kb on + strand, within BACOVA_04923 at 336.789 kb on + strand, within BACOVA_04923 at 336.796 kb on + strand, within BACOVA_04923 at 336.811 kb on + strand, within BACOVA_04923 at 336.811 kb on + strand, within BACOVA_04923 at 336.811 kb on + strand, within BACOVA_04923 at 336.847 kb on + strand, within BACOVA_04923 at 336.850 kb on - strand, within BACOVA_04923 at 336.850 kb on - strand, within BACOVA_04923 at 336.918 kb on - strand, within BACOVA_04923 at 336.974 kb on - strand, within BACOVA_04923 at 336.977 kb on - strand, within BACOVA_04923 at 336.998 kb on - strand, within BACOVA_04923 at 337.093 kb on - strand, within BACOVA_04923 at 337.108 kb on + strand, within BACOVA_04923 at 337.108 kb on + strand, within BACOVA_04923 at 337.109 kb on - strand, within BACOVA_04923 at 337.131 kb on + strand, within BACOVA_04923 at 337.161 kb on + strand, within BACOVA_04923 at 337.161 kb on + strand, within BACOVA_04923 at 337.162 kb on - strand, within BACOVA_04923 at 337.162 kb on - strand, within BACOVA_04923 at 337.162 kb on - strand, within BACOVA_04923
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C) remove 333,269 + BACOVA_04921 0.70 -1.5 333,346 + BACOVA_04921 0.72 -0.7 333,360 + BACOVA_04921 0.73 -2.4 333,433 + BACOVA_04921 0.75 -0.7 333,434 - BACOVA_04921 0.75 +0.8 333,453 + BACOVA_04921 0.75 +0.8 333,469 + BACOVA_04921 0.76 +0.2 333,493 + BACOVA_04921 0.77 -0.2 333,561 - BACOVA_04921 0.79 -2.2 333,679 - BACOVA_04921 0.82 -1.3 333,730 + BACOVA_04921 0.84 -1.7 333,730 + BACOVA_04921 0.84 -1.1 333,731 - BACOVA_04921 0.84 +0.2 333,731 - BACOVA_04921 0.84 -1.3 333,732 + BACOVA_04921 0.84 -1.7 333,733 - BACOVA_04921 0.84 -0.4 333,765 + BACOVA_04921 0.85 +0.5 333,765 + BACOVA_04921 0.85 -1.6 333,766 - BACOVA_04921 0.85 +1.8 333,861 + BACOVA_04921 0.88 -0.6 333,874 - BACOVA_04921 0.89 -1.8 333,905 - BACOVA_04921 0.89 +1.0 333,981 + +1.4 333,981 + +2.5 333,989 - -1.3 333,989 - -1.2 334,093 + -1.3 334,098 - -1.8 334,098 - +2.6 334,132 - +0.9 334,187 - +0.4 334,210 - -3.0 334,213 + -2.8 334,215 + -1.2 334,274 - +1.1 334,281 + -2.3 334,282 - -0.2 334,287 - -1.9 334,307 - -1.1 334,377 + +4.0 334,377 + -3.7 334,422 - +0.2 334,526 - BACOVA_04922 0.14 +0.6 334,542 + BACOVA_04922 0.14 -2.4 334,542 + BACOVA_04922 0.14 +0.1 334,597 + BACOVA_04922 0.17 +4.7 334,597 + BACOVA_04922 0.17 +3.5 334,598 - BACOVA_04922 0.17 +1.5 334,617 - BACOVA_04922 0.18 -1.1 334,671 + BACOVA_04922 0.21 -1.0 334,706 + BACOVA_04922 0.23 +0.4 334,707 - BACOVA_04922 0.23 +0.3 334,707 - BACOVA_04922 0.23 +0.2 334,740 - BACOVA_04922 0.25 -1.9 334,770 + BACOVA_04922 0.26 +1.5 334,771 - BACOVA_04922 0.26 -1.0 334,869 + BACOVA_04922 0.32 -2.3 334,869 + BACOVA_04922 0.32 +0.8 334,870 - BACOVA_04922 0.32 -0.8 334,870 - BACOVA_04922 0.32 +0.2 334,875 + BACOVA_04922 0.32 -2.8 334,876 - BACOVA_04922 0.32 -2.4 334,876 - BACOVA_04922 0.32 +3.5 334,876 - BACOVA_04922 0.32 +0.9 334,892 + BACOVA_04922 0.33 +0.4 334,892 + BACOVA_04922 0.33 +0.2 334,937 + BACOVA_04922 0.35 -0.8 335,055 - BACOVA_04922 0.41 +1.5 335,057 + BACOVA_04922 0.41 +2.5 335,076 - BACOVA_04922 0.42 +1.1 335,089 - BACOVA_04922 0.43 +1.6 335,149 + BACOVA_04922 0.46 -1.3 335,226 - BACOVA_04922 0.50 -2.4 335,227 + BACOVA_04922 0.50 -0.8 335,227 + BACOVA_04922 0.50 -1.0 335,227 + BACOVA_04922 0.50 +0.2 335,228 - BACOVA_04922 0.50 -0.6 335,230 + BACOVA_04922 0.51 -1.7 335,231 - BACOVA_04922 0.51 -0.1 335,282 + BACOVA_04922 0.53 -0.2 335,283 - BACOVA_04922 0.53 -1.1 335,283 - BACOVA_04922 0.53 -1.5 335,283 - BACOVA_04922 0.53 -1.0 335,286 + BACOVA_04922 0.54 +1.1 335,303 + BACOVA_04922 0.54 -0.1 335,310 - BACOVA_04922 0.55 -2.0 335,341 + BACOVA_04922 0.56 +0.8 335,360 - BACOVA_04922 0.57 +4.2 335,360 - BACOVA_04922 0.57 -1.0 335,435 + BACOVA_04922 0.61 -0.3 335,437 + BACOVA_04922 0.61 -1.6 335,437 + BACOVA_04922 0.61 -2.0 335,438 - BACOVA_04922 0.62 -1.1 335,438 - BACOVA_04922 0.62 -2.1 335,470 + BACOVA_04922 0.63 -0.1 335,471 - BACOVA_04922 0.63 -1.5 335,471 - BACOVA_04922 0.63 +1.0 335,473 + BACOVA_04922 0.63 -1.4 335,480 - BACOVA_04922 0.64 -2.3 335,490 + BACOVA_04922 0.64 -1.6 335,491 - BACOVA_04922 0.64 +1.8 335,491 - BACOVA_04922 0.64 -1.8 335,522 + BACOVA_04922 0.66 +1.2 335,522 + BACOVA_04922 0.66 -2.7 335,522 + BACOVA_04922 0.66 -0.8 335,523 - BACOVA_04922 0.66 +0.0 335,623 + BACOVA_04922 0.71 -1.3 335,624 - BACOVA_04922 0.71 -1.8 335,628 + BACOVA_04922 0.72 -2.7 335,654 - BACOVA_04922 0.73 +0.4 335,693 - BACOVA_04922 0.75 -1.1 335,717 - BACOVA_04922 0.76 +0.3 335,726 + BACOVA_04922 0.77 -0.2 335,746 + BACOVA_04922 0.78 -0.5 335,750 + BACOVA_04922 0.78 +0.7 335,761 + BACOVA_04922 0.78 +1.6 335,766 - BACOVA_04922 0.79 +0.3 335,775 - BACOVA_04922 0.79 -2.1 335,775 - BACOVA_04922 0.79 +0.1 335,817 - BACOVA_04922 0.81 -0.3 335,846 - BACOVA_04922 0.83 -1.5 335,846 - BACOVA_04922 0.83 -2.7 335,848 + BACOVA_04922 0.83 -0.8 335,853 - BACOVA_04922 0.83 -1.2 335,899 - BACOVA_04922 0.86 -0.3 335,911 + BACOVA_04922 0.86 +0.9 335,912 - BACOVA_04922 0.86 +0.5 335,921 + BACOVA_04922 0.87 -1.2 335,951 + BACOVA_04922 0.88 +1.7 336,026 - -1.0 336,049 + -0.6 336,050 - -0.6 336,082 + -0.1 336,126 + -0.4 336,155 + -1.5 336,156 - -0.9 336,190 - -1.0 336,276 + +0.1 336,277 - -1.3 336,317 + -2.9 336,364 + BACOVA_04923 0.11 +1.5 336,364 + BACOVA_04923 0.11 +0.4 336,457 + BACOVA_04923 0.16 -0.3 336,475 - BACOVA_04923 0.17 -2.4 336,497 - BACOVA_04923 0.19 +1.1 336,551 - BACOVA_04923 0.22 -2.7 336,678 + BACOVA_04923 0.30 +0.1 336,679 - BACOVA_04923 0.30 -3.1 336,681 + BACOVA_04923 0.30 -0.4 336,681 + BACOVA_04923 0.30 +0.2 336,681 + BACOVA_04923 0.30 -0.5 336,682 - BACOVA_04923 0.30 +1.5 336,682 - BACOVA_04923 0.30 -1.8 336,682 - BACOVA_04923 0.30 +0.9 336,683 + BACOVA_04923 0.30 -0.1 336,683 + BACOVA_04923 0.30 -0.3 336,684 - BACOVA_04923 0.30 -0.7 336,697 - BACOVA_04923 0.31 -0.8 336,724 - BACOVA_04923 0.32 +0.2 336,789 + BACOVA_04923 0.36 +1.4 336,789 + BACOVA_04923 0.36 +0.0 336,789 + BACOVA_04923 0.36 -0.1 336,796 + BACOVA_04923 0.37 -1.0 336,811 + BACOVA_04923 0.38 +3.8 336,811 + BACOVA_04923 0.38 -1.0 336,811 + BACOVA_04923 0.38 -1.1 336,847 + BACOVA_04923 0.40 -1.3 336,850 - BACOVA_04923 0.40 +0.2 336,850 - BACOVA_04923 0.40 -2.1 336,918 - BACOVA_04923 0.44 -1.8 336,974 - BACOVA_04923 0.47 -1.3 336,977 - BACOVA_04923 0.48 +0.7 336,998 - BACOVA_04923 0.49 +4.4 337,093 - BACOVA_04923 0.55 -1.2 337,108 + BACOVA_04923 0.56 -1.2 337,108 + BACOVA_04923 0.56 -1.0 337,109 - BACOVA_04923 0.56 -2.6 337,131 + BACOVA_04923 0.57 -2.3 337,161 + BACOVA_04923 0.59 -1.0 337,161 + BACOVA_04923 0.59 +0.3 337,162 - BACOVA_04923 0.59 -0.0 337,162 - BACOVA_04923 0.59 -0.2 337,162 - BACOVA_04923 0.59 -0.5
Or see this region's nucleotide sequence