Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04689 and BACOVA_04690 are separated by 3 nucleotides BACOVA_04690 and BACOVA_04691 overlap by 4 nucleotides BACOVA_04691 and BACOVA_04692 overlap by 10 nucleotides BACOVA_04692 and BACOVA_04693 overlap by 17 nucleotides
BACOVA_04689: BACOVA_04689 - hypothetical protein, at 58,273 to 59,322
_04689
BACOVA_04690: BACOVA_04690 - hypothetical protein, at 59,326 to 59,796
_04690
BACOVA_04691: BACOVA_04691 - hypothetical protein, at 59,793 to 60,194
_04691
BACOVA_04692: BACOVA_04692 - hypothetical protein, at 60,185 to 60,775
_04692
BACOVA_04693: BACOVA_04693 - hypothetical protein, at 60,759 to 61,610
_04693
Position (kb) 59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 59.015 kb on - strand, within BACOVA_04689 at 59.342 kb on - strand at 59.344 kb on - strand at 59.349 kb on + strand at 59.349 kb on + strand at 59.444 kb on - strand, within BACOVA_04690 at 59.453 kb on + strand, within BACOVA_04690 at 59.453 kb on - strand, within BACOVA_04690 at 59.453 kb on - strand, within BACOVA_04690 at 59.463 kb on + strand, within BACOVA_04690 at 59.509 kb on - strand, within BACOVA_04690 at 59.509 kb on - strand, within BACOVA_04690 at 59.551 kb on - strand, within BACOVA_04690 at 59.581 kb on - strand, within BACOVA_04690 at 59.593 kb on + strand, within BACOVA_04690 at 59.644 kb on - strand, within BACOVA_04690 at 59.657 kb on + strand, within BACOVA_04690 at 59.657 kb on + strand, within BACOVA_04690 at 59.680 kb on + strand, within BACOVA_04690 at 59.806 kb on + strand at 59.824 kb on - strand at 59.824 kb on - strand at 59.885 kb on + strand, within BACOVA_04691 at 59.885 kb on + strand, within BACOVA_04691 at 59.885 kb on + strand, within BACOVA_04691 at 59.963 kb on - strand, within BACOVA_04691 at 59.963 kb on - strand, within BACOVA_04691 at 60.041 kb on + strand, within BACOVA_04691 at 60.076 kb on - strand, within BACOVA_04691 at 60.180 kb on + strand at 60.185 kb on - strand at 60.185 kb on - strand at 60.222 kb on + strand at 60.281 kb on + strand, within BACOVA_04692 at 60.282 kb on - strand, within BACOVA_04692 at 60.320 kb on + strand, within BACOVA_04692 at 60.320 kb on + strand, within BACOVA_04692 at 60.321 kb on - strand, within BACOVA_04692 at 60.321 kb on - strand, within BACOVA_04692 at 60.321 kb on - strand, within BACOVA_04692 at 60.331 kb on - strand, within BACOVA_04692 at 60.339 kb on + strand, within BACOVA_04692 at 60.340 kb on - strand, within BACOVA_04692 at 60.359 kb on + strand, within BACOVA_04692 at 60.360 kb on - strand, within BACOVA_04692 at 60.363 kb on + strand, within BACOVA_04692 at 60.363 kb on + strand, within BACOVA_04692 at 60.364 kb on - strand, within BACOVA_04692 at 60.364 kb on - strand, within BACOVA_04692 at 60.379 kb on + strand, within BACOVA_04692 at 60.380 kb on - strand, within BACOVA_04692 at 60.400 kb on - strand, within BACOVA_04692 at 60.536 kb on + strand, within BACOVA_04692 at 60.537 kb on - strand, within BACOVA_04692 at 60.557 kb on - strand, within BACOVA_04692 at 60.560 kb on + strand, within BACOVA_04692 at 60.730 kb on - strand at 60.740 kb on + strand at 60.741 kb on - strand at 60.741 kb on - strand at 60.785 kb on - strand at 60.814 kb on + strand at 60.823 kb on - strand at 60.868 kb on - strand, within BACOVA_04693 at 60.930 kb on + strand, within BACOVA_04693 at 61.091 kb on - strand, within BACOVA_04693 at 61.091 kb on - strand, within BACOVA_04693 at 61.163 kb on - strand, within BACOVA_04693 at 61.163 kb on - strand, within BACOVA_04693
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C) remove 59,015 - BACOVA_04689 0.71 +0.5 59,342 - +2.5 59,344 - -0.7 59,349 + +0.6 59,349 + +1.4 59,444 - BACOVA_04690 0.25 +0.1 59,453 + BACOVA_04690 0.27 -0.8 59,453 - BACOVA_04690 0.27 +3.0 59,453 - BACOVA_04690 0.27 -1.4 59,463 + BACOVA_04690 0.29 -2.8 59,509 - BACOVA_04690 0.39 -0.4 59,509 - BACOVA_04690 0.39 -0.1 59,551 - BACOVA_04690 0.48 -0.5 59,581 - BACOVA_04690 0.54 +1.4 59,593 + BACOVA_04690 0.57 +1.9 59,644 - BACOVA_04690 0.68 +0.3 59,657 + BACOVA_04690 0.70 -2.4 59,657 + BACOVA_04690 0.70 +0.3 59,680 + BACOVA_04690 0.75 -0.5 59,806 + -1.4 59,824 - -0.5 59,824 - -2.5 59,885 + BACOVA_04691 0.23 +0.4 59,885 + BACOVA_04691 0.23 -1.7 59,885 + BACOVA_04691 0.23 -1.2 59,963 - BACOVA_04691 0.42 -0.1 59,963 - BACOVA_04691 0.42 +0.5 60,041 + BACOVA_04691 0.62 -1.7 60,076 - BACOVA_04691 0.70 -0.0 60,180 + -2.2 60,185 - -0.2 60,185 - +0.2 60,222 + -2.3 60,281 + BACOVA_04692 0.16 -0.1 60,282 - BACOVA_04692 0.16 +3.5 60,320 + BACOVA_04692 0.23 -2.6 60,320 + BACOVA_04692 0.23 +0.7 60,321 - BACOVA_04692 0.23 +0.7 60,321 - BACOVA_04692 0.23 -0.7 60,321 - BACOVA_04692 0.23 +0.8 60,331 - BACOVA_04692 0.25 -1.6 60,339 + BACOVA_04692 0.26 -0.1 60,340 - BACOVA_04692 0.26 -0.6 60,359 + BACOVA_04692 0.29 +1.2 60,360 - BACOVA_04692 0.30 -0.1 60,363 + BACOVA_04692 0.30 -3.1 60,363 + BACOVA_04692 0.30 -1.1 60,364 - BACOVA_04692 0.30 +1.1 60,364 - BACOVA_04692 0.30 -1.6 60,379 + BACOVA_04692 0.33 -1.7 60,380 - BACOVA_04692 0.33 -2.6 60,400 - BACOVA_04692 0.36 -1.7 60,536 + BACOVA_04692 0.59 +0.3 60,537 - BACOVA_04692 0.60 +0.8 60,557 - BACOVA_04692 0.63 +0.2 60,560 + BACOVA_04692 0.63 +1.7 60,730 - -1.0 60,740 + -0.3 60,741 - -2.9 60,741 - +1.1 60,785 - +0.9 60,814 + +1.7 60,823 - -3.1 60,868 - BACOVA_04693 0.13 -0.5 60,930 + BACOVA_04693 0.20 -0.5 61,091 - BACOVA_04693 0.39 +0.4 61,091 - BACOVA_04693 0.39 +1.2 61,163 - BACOVA_04693 0.47 +0.5 61,163 - BACOVA_04693 0.47 +0.1
Or see this region's nucleotide sequence