Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04193

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04192 and BACOVA_04193 are separated by 218 nucleotidesBACOVA_04193 and BACOVA_04194 are separated by 303 nucleotides BACOVA_04192: BACOVA_04192 - YbaK/proline--tRNA ligase associated domain protein, at 69,228 to 69,791 _04192 BACOVA_04193: BACOVA_04193 - hypothetical protein, at 70,010 to 70,114 _04193 BACOVA_04194: BACOVA_04194 - efflux ABC transporter, permease protein, at 70,418 to 72,838 _04194 Position (kb) 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 69.020 kb on - strandat 69.068 kb on - strandat 69.121 kb on - strandat 69.121 kb on - strandat 69.133 kb on + strandat 69.133 kb on + strandat 69.137 kb on + strandat 69.137 kb on + strandat 69.140 kb on + strandat 69.161 kb on + strandat 69.162 kb on - strandat 69.213 kb on - strandat 69.227 kb on + strandat 69.227 kb on + strandat 69.234 kb on - strandat 69.238 kb on + strandat 69.239 kb on - strandat 69.245 kb on + strandat 69.246 kb on - strandat 69.246 kb on - strandat 69.274 kb on - strandat 69.295 kb on - strand, within BACOVA_04192at 69.322 kb on - strand, within BACOVA_04192at 69.322 kb on - strand, within BACOVA_04192at 69.403 kb on + strand, within BACOVA_04192at 69.422 kb on + strand, within BACOVA_04192at 69.423 kb on - strand, within BACOVA_04192at 69.423 kb on - strand, within BACOVA_04192at 69.452 kb on + strand, within BACOVA_04192at 69.453 kb on - strand, within BACOVA_04192at 69.478 kb on + strand, within BACOVA_04192at 69.526 kb on + strand, within BACOVA_04192at 69.527 kb on - strand, within BACOVA_04192at 69.527 kb on - strand, within BACOVA_04192at 69.527 kb on - strand, within BACOVA_04192at 69.530 kb on + strand, within BACOVA_04192at 69.531 kb on - strand, within BACOVA_04192at 69.582 kb on - strand, within BACOVA_04192at 69.607 kb on + strand, within BACOVA_04192at 69.608 kb on - strand, within BACOVA_04192at 69.614 kb on + strand, within BACOVA_04192at 69.614 kb on + strand, within BACOVA_04192at 69.615 kb on - strand, within BACOVA_04192at 69.623 kb on + strand, within BACOVA_04192at 69.637 kb on + strand, within BACOVA_04192at 69.638 kb on - strand, within BACOVA_04192at 69.654 kb on - strand, within BACOVA_04192at 69.675 kb on + strand, within BACOVA_04192at 69.675 kb on + strand, within BACOVA_04192at 69.675 kb on + strand, within BACOVA_04192at 69.676 kb on - strand, within BACOVA_04192at 69.676 kb on - strand, within BACOVA_04192at 69.676 kb on - strand, within BACOVA_04192at 69.677 kb on + strand, within BACOVA_04192at 69.678 kb on - strand, within BACOVA_04192at 69.679 kb on + strand, within BACOVA_04192at 69.679 kb on + strand, within BACOVA_04192at 69.679 kb on + strand, within BACOVA_04192at 69.679 kb on + strand, within BACOVA_04192at 69.680 kb on - strand, within BACOVA_04192at 69.697 kb on + strand, within BACOVA_04192at 69.698 kb on - strand, within BACOVA_04192at 69.698 kb on - strand, within BACOVA_04192at 69.743 kb on - strandat 69.743 kb on - strandat 69.746 kb on - strandat 69.746 kb on - strandat 69.746 kb on - strandat 69.789 kb on + strandat 69.836 kb on + strandat 69.837 kb on - strandat 69.858 kb on + strandat 69.859 kb on - strandat 69.863 kb on + strandat 69.863 kb on + strandat 69.863 kb on + strandat 69.864 kb on - strandat 70.002 kb on + strandat 70.012 kb on - strandat 70.047 kb on + strand, within BACOVA_04193at 70.116 kb on + strandat 70.116 kb on + strandat 70.116 kb on + strandat 70.131 kb on - strandat 70.199 kb on - strandat 70.210 kb on - strandat 70.214 kb on - strandat 70.293 kb on - strandat 70.293 kb on - strandat 70.317 kb on - strandat 70.321 kb on + strandat 70.326 kb on + strandat 70.327 kb on - strandat 70.329 kb on - strandat 70.341 kb on + strandat 70.341 kb on + strandat 70.406 kb on + strandat 70.455 kb on - strandat 70.511 kb on + strandat 70.517 kb on + strandat 70.517 kb on + strandat 70.517 kb on + strandat 70.517 kb on + strandat 70.521 kb on - strandat 70.521 kb on - strandat 70.523 kb on - strandat 70.523 kb on - strandat 70.565 kb on + strandat 70.579 kb on + strandat 70.579 kb on + strandat 70.604 kb on + strandat 70.605 kb on - strandat 70.605 kb on - strandat 70.606 kb on + strandat 70.606 kb on + strandat 70.688 kb on - strand, within BACOVA_04194at 70.691 kb on + strand, within BACOVA_04194at 70.692 kb on - strand, within BACOVA_04194at 70.692 kb on - strand, within BACOVA_04194at 70.733 kb on + strand, within BACOVA_04194at 70.759 kb on + strand, within BACOVA_04194at 70.946 kb on - strand, within BACOVA_04194at 70.947 kb on + strand, within BACOVA_04194at 70.947 kb on + strand, within BACOVA_04194at 70.947 kb on + strand, within BACOVA_04194at 70.948 kb on - strand, within BACOVA_04194at 70.993 kb on + strand, within BACOVA_04194at 70.993 kb on + strand, within BACOVA_04194at 71.000 kb on - strand, within BACOVA_04194at 71.000 kb on - strand, within BACOVA_04194at 71.001 kb on + strand, within BACOVA_04194at 71.068 kb on + strand, within BACOVA_04194at 71.069 kb on - strand, within BACOVA_04194at 71.069 kb on - strand, within BACOVA_04194at 71.081 kb on + strand, within BACOVA_04194at 71.082 kb on - strand, within BACOVA_04194

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Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
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69,020 - -1.8
69,068 - +0.4
69,121 - -0.3
69,121 - -1.4
69,133 + -1.9
69,133 + -1.7
69,137 + +1.0
69,137 + +0.8
69,140 + -0.4
69,161 + -0.6
69,162 - -0.3
69,213 - -1.5
69,227 + +3.2
69,227 + +0.6
69,234 - -0.3
69,238 + -0.8
69,239 - -0.5
69,245 + +3.4
69,246 - -1.9
69,246 - -2.4
69,274 - -2.4
69,295 - BACOVA_04192 0.12 -1.5
69,322 - BACOVA_04192 0.17 +0.4
69,322 - BACOVA_04192 0.17 +0.5
69,403 + BACOVA_04192 0.31 -0.3
69,422 + BACOVA_04192 0.34 -0.1
69,423 - BACOVA_04192 0.35 +3.4
69,423 - BACOVA_04192 0.35 +0.6
69,452 + BACOVA_04192 0.40 -1.4
69,453 - BACOVA_04192 0.40 +0.1
69,478 + BACOVA_04192 0.44 -0.3
69,526 + BACOVA_04192 0.53 -0.1
69,527 - BACOVA_04192 0.53 -0.5
69,527 - BACOVA_04192 0.53 +1.8
69,527 - BACOVA_04192 0.53 -1.2
69,530 + BACOVA_04192 0.54 -1.3
69,531 - BACOVA_04192 0.54 -1.4
69,582 - BACOVA_04192 0.63 -1.5
69,607 + BACOVA_04192 0.67 -0.8
69,608 - BACOVA_04192 0.67 +3.2
69,614 + BACOVA_04192 0.68 +0.3
69,614 + BACOVA_04192 0.68 +1.0
69,615 - BACOVA_04192 0.69 -2.0
69,623 + BACOVA_04192 0.70 -2.3
69,637 + BACOVA_04192 0.73 +0.7
69,638 - BACOVA_04192 0.73 +0.5
69,654 - BACOVA_04192 0.76 +0.4
69,675 + BACOVA_04192 0.79 +0.2
69,675 + BACOVA_04192 0.79 +2.7
69,675 + BACOVA_04192 0.79 -0.4
69,676 - BACOVA_04192 0.79 -0.8
69,676 - BACOVA_04192 0.79 +0.2
69,676 - BACOVA_04192 0.79 +3.0
69,677 + BACOVA_04192 0.80 +3.2
69,678 - BACOVA_04192 0.80 -0.3
69,679 + BACOVA_04192 0.80 -0.9
69,679 + BACOVA_04192 0.80 -1.7
69,679 + BACOVA_04192 0.80 -0.1
69,679 + BACOVA_04192 0.80 -1.6
69,680 - BACOVA_04192 0.80 -1.6
69,697 + BACOVA_04192 0.83 -1.5
69,698 - BACOVA_04192 0.83 -1.8
69,698 - BACOVA_04192 0.83 -1.6
69,743 - -0.1
69,743 - +0.4
69,746 - -1.3
69,746 - +0.9
69,746 - -3.2
69,789 + -0.6
69,836 + +0.2
69,837 - +0.2
69,858 + +2.2
69,859 - -3.1
69,863 + -2.6
69,863 + +1.4
69,863 + +0.1
69,864 - +0.8
70,002 + +6.0
70,012 - +0.2
70,047 + BACOVA_04193 0.35 +0.8
70,116 + -0.4
70,116 + -0.3
70,116 + +1.8
70,131 - -0.1
70,199 - -0.1
70,210 - -1.2
70,214 - +1.6
70,293 - +0.0
70,293 - +3.6
70,317 - -1.0
70,321 + +1.2
70,326 + -1.1
70,327 - +2.3
70,329 - -0.4
70,341 + -1.1
70,341 + +1.2
70,406 + +0.5
70,455 - -2.2
70,511 + -1.0
70,517 + +1.0
70,517 + -1.3
70,517 + -3.1
70,517 + -0.4
70,521 - -1.8
70,521 - -0.4
70,523 - -1.7
70,523 - +1.6
70,565 + -3.2
70,579 + -0.5
70,579 + -1.2
70,604 + -2.6
70,605 - -1.5
70,605 - -1.4
70,606 + -0.3
70,606 + +0.0
70,688 - BACOVA_04194 0.11 +0.6
70,691 + BACOVA_04194 0.11 -0.7
70,692 - BACOVA_04194 0.11 +0.2
70,692 - BACOVA_04194 0.11 -0.1
70,733 + BACOVA_04194 0.13 -1.4
70,759 + BACOVA_04194 0.14 -0.8
70,946 - BACOVA_04194 0.22 -0.4
70,947 + BACOVA_04194 0.22 +0.3
70,947 + BACOVA_04194 0.22 +2.4
70,947 + BACOVA_04194 0.22 +1.2
70,948 - BACOVA_04194 0.22 +0.7
70,993 + BACOVA_04194 0.24 +0.0
70,993 + BACOVA_04194 0.24 +1.8
71,000 - BACOVA_04194 0.24 -1.8
71,000 - BACOVA_04194 0.24 +0.5
71,001 + BACOVA_04194 0.24 +0.2
71,068 + BACOVA_04194 0.27 -0.9
71,069 - BACOVA_04194 0.27 -0.2
71,069 - BACOVA_04194 0.27 -2.0
71,081 + BACOVA_04194 0.27 +3.9
71,082 - BACOVA_04194 0.27 +0.6

Or see this region's nucleotide sequence