Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04050

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04049 and BACOVA_04050 are separated by 66 nucleotidesBACOVA_04050 and BACOVA_04051 overlap by 44 nucleotidesBACOVA_04051 and BACOVA_04052 are separated by 2 nucleotides BACOVA_04049: BACOVA_04049 - transcriptional regulator, AraC family, at 381,952 to 382,791 _04049 BACOVA_04050: BACOVA_04050 - lipoyl(octanoyl) transferase, at 382,858 to 383,541 _04050 BACOVA_04051: BACOVA_04051 - hypothetical protein, at 383,498 to 384,415 _04051 BACOVA_04052: BACOVA_04052 - hypothetical protein, at 384,418 to 385,974 _04052 Position (kb) 382 383 384Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 381.925 kb on + strandat 381.926 kb on - strandat 381.934 kb on + strandat 381.953 kb on + strandat 381.985 kb on + strandat 381.986 kb on - strandat 381.989 kb on + strandat 381.989 kb on + strandat 382.040 kb on + strand, within BACOVA_04049at 382.040 kb on + strand, within BACOVA_04049at 382.041 kb on - strand, within BACOVA_04049at 382.045 kb on + strand, within BACOVA_04049at 382.046 kb on - strand, within BACOVA_04049at 382.056 kb on + strand, within BACOVA_04049at 382.062 kb on + strand, within BACOVA_04049at 382.063 kb on - strand, within BACOVA_04049at 382.098 kb on + strand, within BACOVA_04049at 382.099 kb on - strand, within BACOVA_04049at 382.104 kb on + strand, within BACOVA_04049at 382.105 kb on - strand, within BACOVA_04049at 382.106 kb on + strand, within BACOVA_04049at 382.106 kb on + strand, within BACOVA_04049at 382.106 kb on + strand, within BACOVA_04049at 382.107 kb on - strand, within BACOVA_04049at 382.107 kb on - strand, within BACOVA_04049at 382.107 kb on - strand, within BACOVA_04049at 382.107 kb on - strand, within BACOVA_04049at 382.160 kb on - strand, within BACOVA_04049at 382.160 kb on - strand, within BACOVA_04049at 382.174 kb on + strand, within BACOVA_04049at 382.174 kb on + strand, within BACOVA_04049at 382.175 kb on - strand, within BACOVA_04049at 382.177 kb on - strand, within BACOVA_04049at 382.180 kb on + strand, within BACOVA_04049at 382.180 kb on + strand, within BACOVA_04049at 382.186 kb on - strand, within BACOVA_04049at 382.304 kb on + strand, within BACOVA_04049at 382.305 kb on - strand, within BACOVA_04049at 382.305 kb on - strand, within BACOVA_04049at 382.305 kb on - strand, within BACOVA_04049at 382.307 kb on - strand, within BACOVA_04049at 382.307 kb on - strand, within BACOVA_04049at 382.307 kb on - strand, within BACOVA_04049at 382.307 kb on - strand, within BACOVA_04049at 382.307 kb on - strand, within BACOVA_04049at 382.315 kb on + strand, within BACOVA_04049at 382.315 kb on + strand, within BACOVA_04049at 382.316 kb on - strand, within BACOVA_04049at 382.409 kb on + strand, within BACOVA_04049at 382.410 kb on - strand, within BACOVA_04049at 382.440 kb on + strand, within BACOVA_04049at 382.441 kb on - strand, within BACOVA_04049at 382.463 kb on - strand, within BACOVA_04049at 382.463 kb on - strand, within BACOVA_04049at 382.482 kb on + strand, within BACOVA_04049at 382.550 kb on - strand, within BACOVA_04049at 382.595 kb on - strand, within BACOVA_04049at 382.626 kb on - strand, within BACOVA_04049at 382.626 kb on - strand, within BACOVA_04049at 382.666 kb on - strand, within BACOVA_04049at 382.680 kb on + strand, within BACOVA_04049at 382.680 kb on + strand, within BACOVA_04049at 382.681 kb on - strand, within BACOVA_04049at 382.710 kb on - strandat 382.732 kb on + strandat 382.733 kb on - strandat 382.766 kb on - strandat 382.768 kb on + strandat 382.792 kb on - strandat 382.807 kb on - strandat 382.809 kb on + strandat 382.839 kb on - strandat 382.873 kb on - strandat 382.894 kb on + strandat 382.895 kb on - strandat 382.978 kb on - strand, within BACOVA_04050at 383.005 kb on + strand, within BACOVA_04050at 383.006 kb on - strand, within BACOVA_04050at 383.007 kb on + strand, within BACOVA_04050at 383.012 kb on + strand, within BACOVA_04050at 383.019 kb on + strand, within BACOVA_04050at 383.034 kb on + strand, within BACOVA_04050at 383.109 kb on + strand, within BACOVA_04050at 383.109 kb on + strand, within BACOVA_04050at 383.110 kb on - strand, within BACOVA_04050at 383.110 kb on - strand, within BACOVA_04050at 383.113 kb on + strand, within BACOVA_04050at 383.186 kb on - strand, within BACOVA_04050at 383.335 kb on + strand, within BACOVA_04050at 383.378 kb on + strand, within BACOVA_04050at 383.378 kb on + strand, within BACOVA_04050at 383.379 kb on - strand, within BACOVA_04050at 383.413 kb on - strand, within BACOVA_04050at 383.414 kb on + strand, within BACOVA_04050at 383.415 kb on - strand, within BACOVA_04050at 383.418 kb on + strand, within BACOVA_04050at 383.448 kb on - strand, within BACOVA_04050at 383.552 kb on - strandat 383.620 kb on - strand, within BACOVA_04051at 383.690 kb on - strand, within BACOVA_04051at 383.703 kb on - strand, within BACOVA_04051at 383.801 kb on - strand, within BACOVA_04051at 383.853 kb on - strand, within BACOVA_04051at 383.948 kb on - strand, within BACOVA_04051at 383.948 kb on - strand, within BACOVA_04051at 384.024 kb on - strand, within BACOVA_04051at 384.047 kb on + strand, within BACOVA_04051at 384.047 kb on + strand, within BACOVA_04051at 384.070 kb on - strand, within BACOVA_04051at 384.083 kb on - strand, within BACOVA_04051at 384.107 kb on + strand, within BACOVA_04051at 384.108 kb on - strand, within BACOVA_04051at 384.122 kb on + strand, within BACOVA_04051at 384.123 kb on - strand, within BACOVA_04051at 384.123 kb on - strand, within BACOVA_04051at 384.161 kb on - strand, within BACOVA_04051at 384.161 kb on - strand, within BACOVA_04051at 384.165 kb on - strand, within BACOVA_04051at 384.171 kb on + strand, within BACOVA_04051at 384.192 kb on + strand, within BACOVA_04051at 384.260 kb on - strand, within BACOVA_04051at 384.262 kb on + strand, within BACOVA_04051at 384.263 kb on - strand, within BACOVA_04051at 384.282 kb on - strand, within BACOVA_04051at 384.289 kb on + strand, within BACOVA_04051at 384.405 kb on - strandat 384.424 kb on - strandat 384.472 kb on - strandat 384.514 kb on + strandat 384.529 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
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381,925 + +2.2
381,926 - -0.6
381,934 + -1.1
381,953 + +0.5
381,985 + -1.1
381,986 - -0.5
381,989 + +1.5
381,989 + -0.5
382,040 + BACOVA_04049 0.10 +1.7
382,040 + BACOVA_04049 0.10 +1.7
382,041 - BACOVA_04049 0.11 +1.4
382,045 + BACOVA_04049 0.11 -1.6
382,046 - BACOVA_04049 0.11 +2.0
382,056 + BACOVA_04049 0.12 +0.7
382,062 + BACOVA_04049 0.13 +0.3
382,063 - BACOVA_04049 0.13 -2.6
382,098 + BACOVA_04049 0.17 +0.2
382,099 - BACOVA_04049 0.17 -3.2
382,104 + BACOVA_04049 0.18 -0.6
382,105 - BACOVA_04049 0.18 -0.2
382,106 + BACOVA_04049 0.18 +0.9
382,106 + BACOVA_04049 0.18 +0.9
382,106 + BACOVA_04049 0.18 -1.9
382,107 - BACOVA_04049 0.18 -0.7
382,107 - BACOVA_04049 0.18 -0.2
382,107 - BACOVA_04049 0.18 +0.9
382,107 - BACOVA_04049 0.18 -1.0
382,160 - BACOVA_04049 0.25 -0.3
382,160 - BACOVA_04049 0.25 -2.3
382,174 + BACOVA_04049 0.26 -1.5
382,174 + BACOVA_04049 0.26 -0.8
382,175 - BACOVA_04049 0.27 -1.9
382,177 - BACOVA_04049 0.27 -2.2
382,180 + BACOVA_04049 0.27 +1.5
382,180 + BACOVA_04049 0.27 +0.2
382,186 - BACOVA_04049 0.28 -0.5
382,304 + BACOVA_04049 0.42 -0.8
382,305 - BACOVA_04049 0.42 +0.7
382,305 - BACOVA_04049 0.42 +0.9
382,305 - BACOVA_04049 0.42 -0.8
382,307 - BACOVA_04049 0.42 +0.4
382,307 - BACOVA_04049 0.42 +1.1
382,307 - BACOVA_04049 0.42 +2.8
382,307 - BACOVA_04049 0.42 -0.4
382,307 - BACOVA_04049 0.42 +1.0
382,315 + BACOVA_04049 0.43 -0.7
382,315 + BACOVA_04049 0.43 +2.1
382,316 - BACOVA_04049 0.43 -1.7
382,409 + BACOVA_04049 0.54 -0.3
382,410 - BACOVA_04049 0.55 +2.0
382,440 + BACOVA_04049 0.58 +0.9
382,441 - BACOVA_04049 0.58 -0.8
382,463 - BACOVA_04049 0.61 -1.1
382,463 - BACOVA_04049 0.61 +0.3
382,482 + BACOVA_04049 0.63 -1.6
382,550 - BACOVA_04049 0.71 -1.0
382,595 - BACOVA_04049 0.77 -0.5
382,626 - BACOVA_04049 0.80 -1.8
382,626 - BACOVA_04049 0.80 -0.5
382,666 - BACOVA_04049 0.85 -2.8
382,680 + BACOVA_04049 0.87 +1.1
382,680 + BACOVA_04049 0.87 -0.6
382,681 - BACOVA_04049 0.87 +1.5
382,710 - -1.2
382,732 + +1.9
382,733 - +1.1
382,766 - -0.6
382,768 + -0.4
382,792 - -0.3
382,807 - +1.6
382,809 + +3.3
382,839 - +2.5
382,873 - -2.6
382,894 + +1.9
382,895 - -1.6
382,978 - BACOVA_04050 0.18 -0.8
383,005 + BACOVA_04050 0.21 +0.2
383,006 - BACOVA_04050 0.22 +3.1
383,007 + BACOVA_04050 0.22 -0.3
383,012 + BACOVA_04050 0.23 +0.4
383,019 + BACOVA_04050 0.24 +0.1
383,034 + BACOVA_04050 0.26 +1.2
383,109 + BACOVA_04050 0.37 -0.2
383,109 + BACOVA_04050 0.37 +3.4
383,110 - BACOVA_04050 0.37 +0.1
383,110 - BACOVA_04050 0.37 +1.4
383,113 + BACOVA_04050 0.37 +0.4
383,186 - BACOVA_04050 0.48 -2.6
383,335 + BACOVA_04050 0.70 +0.1
383,378 + BACOVA_04050 0.76 -2.3
383,378 + BACOVA_04050 0.76 -0.6
383,379 - BACOVA_04050 0.76 -1.5
383,413 - BACOVA_04050 0.81 +0.4
383,414 + BACOVA_04050 0.81 +0.1
383,415 - BACOVA_04050 0.81 +3.7
383,418 + BACOVA_04050 0.82 -2.3
383,448 - BACOVA_04050 0.86 -1.3
383,552 - -0.3
383,620 - BACOVA_04051 0.13 -0.7
383,690 - BACOVA_04051 0.21 +1.8
383,703 - BACOVA_04051 0.22 +0.4
383,801 - BACOVA_04051 0.33 -1.3
383,853 - BACOVA_04051 0.39 +3.6
383,948 - BACOVA_04051 0.49 +1.7
383,948 - BACOVA_04051 0.49 +1.6
384,024 - BACOVA_04051 0.57 -0.8
384,047 + BACOVA_04051 0.60 -1.9
384,047 + BACOVA_04051 0.60 +1.2
384,070 - BACOVA_04051 0.62 +2.7
384,083 - BACOVA_04051 0.64 -0.3
384,107 + BACOVA_04051 0.66 +2.7
384,108 - BACOVA_04051 0.66 -0.5
384,122 + BACOVA_04051 0.68 -1.7
384,123 - BACOVA_04051 0.68 -0.3
384,123 - BACOVA_04051 0.68 +0.7
384,161 - BACOVA_04051 0.72 -0.9
384,161 - BACOVA_04051 0.72 +0.2
384,165 - BACOVA_04051 0.73 -1.3
384,171 + BACOVA_04051 0.73 -0.0
384,192 + BACOVA_04051 0.76 +0.5
384,260 - BACOVA_04051 0.83 +4.1
384,262 + BACOVA_04051 0.83 -0.1
384,263 - BACOVA_04051 0.83 -2.3
384,282 - BACOVA_04051 0.85 +1.3
384,289 + BACOVA_04051 0.86 +0.9
384,405 - -0.8
384,424 - -0.1
384,472 - -0.6
384,514 + +2.3
384,529 - -0.3

Or see this region's nucleotide sequence