Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03654

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03653 and BACOVA_03654 are separated by 128 nucleotidesBACOVA_03654 and BACOVA_03655 are separated by 142 nucleotides BACOVA_03653: BACOVA_03653 - outer membrane protein, OMP85 family, at 485,709 to 488,051 _03653 BACOVA_03654: BACOVA_03654 - hypothetical protein, at 488,180 to 489,091 _03654 BACOVA_03655: BACOVA_03655 - ABC transporter, ATP-binding protein, at 489,234 to 491,189 _03655 Position (kb) 488 489 490Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 487.279 kb on + strand, within BACOVA_03653at 487.279 kb on + strand, within BACOVA_03653at 487.282 kb on - strand, within BACOVA_03653at 487.282 kb on - strand, within BACOVA_03653at 487.283 kb on + strand, within BACOVA_03653at 487.284 kb on - strand, within BACOVA_03653at 487.322 kb on + strand, within BACOVA_03653at 487.326 kb on + strand, within BACOVA_03653at 487.327 kb on - strand, within BACOVA_03653at 487.467 kb on - strand, within BACOVA_03653at 487.487 kb on + strand, within BACOVA_03653at 487.538 kb on + strand, within BACOVA_03653at 487.659 kb on - strand, within BACOVA_03653at 487.677 kb on + strand, within BACOVA_03653at 487.704 kb on + strand, within BACOVA_03653at 487.744 kb on + strand, within BACOVA_03653at 487.744 kb on + strand, within BACOVA_03653at 487.745 kb on - strand, within BACOVA_03653at 487.911 kb on - strandat 487.911 kb on - strandat 487.986 kb on + strandat 488.049 kb on + strandat 488.049 kb on + strandat 488.049 kb on + strandat 488.049 kb on + strandat 488.080 kb on + strandat 488.090 kb on + strandat 488.090 kb on + strandat 488.091 kb on - strandat 488.112 kb on + strandat 488.113 kb on - strandat 488.113 kb on - strandat 488.156 kb on + strandat 489.057 kb on + strandat 489.072 kb on - strandat 489.107 kb on + strandat 489.112 kb on + strandat 489.158 kb on - strandat 489.162 kb on + strandat 489.162 kb on + strandat 489.170 kb on + strandat 489.170 kb on + strandat 489.174 kb on + strandat 489.174 kb on + strandat 489.177 kb on + strandat 489.177 kb on + strandat 489.185 kb on - strandat 489.306 kb on - strandat 489.371 kb on - strandat 489.371 kb on - strandat 489.407 kb on - strandat 489.424 kb on + strandat 489.424 kb on + strandat 489.435 kb on + strand, within BACOVA_03655at 489.436 kb on - strand, within BACOVA_03655at 489.507 kb on - strand, within BACOVA_03655at 489.508 kb on + strand, within BACOVA_03655at 489.509 kb on - strand, within BACOVA_03655at 489.509 kb on - strand, within BACOVA_03655at 489.567 kb on + strand, within BACOVA_03655at 489.582 kb on + strand, within BACOVA_03655at 489.596 kb on - strand, within BACOVA_03655at 489.596 kb on - strand, within BACOVA_03655at 489.713 kb on + strand, within BACOVA_03655at 489.740 kb on + strand, within BACOVA_03655at 489.741 kb on - strand, within BACOVA_03655at 489.741 kb on - strand, within BACOVA_03655at 489.770 kb on - strand, within BACOVA_03655at 489.828 kb on - strand, within BACOVA_03655at 489.854 kb on + strand, within BACOVA_03655at 489.875 kb on - strand, within BACOVA_03655at 489.875 kb on - strand, within BACOVA_03655at 489.910 kb on + strand, within BACOVA_03655at 489.914 kb on + strand, within BACOVA_03655at 489.936 kb on + strand, within BACOVA_03655at 489.954 kb on + strand, within BACOVA_03655at 489.955 kb on - strand, within BACOVA_03655at 489.967 kb on - strand, within BACOVA_03655at 489.979 kb on + strand, within BACOVA_03655at 490.050 kb on - strand, within BACOVA_03655

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Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
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487,279 + BACOVA_03653 0.67 -0.1
487,279 + BACOVA_03653 0.67 +0.3
487,282 - BACOVA_03653 0.67 +0.1
487,282 - BACOVA_03653 0.67 +0.5
487,283 + BACOVA_03653 0.67 -0.6
487,284 - BACOVA_03653 0.67 -0.3
487,322 + BACOVA_03653 0.69 -0.9
487,326 + BACOVA_03653 0.69 +0.5
487,327 - BACOVA_03653 0.69 -0.3
487,467 - BACOVA_03653 0.75 +0.1
487,487 + BACOVA_03653 0.76 +1.4
487,538 + BACOVA_03653 0.78 -0.1
487,659 - BACOVA_03653 0.83 +3.6
487,677 + BACOVA_03653 0.84 +0.5
487,704 + BACOVA_03653 0.85 +0.7
487,744 + BACOVA_03653 0.87 -1.1
487,744 + BACOVA_03653 0.87 -0.3
487,745 - BACOVA_03653 0.87 -0.6
487,911 - -0.3
487,911 - +0.3
487,986 + -1.5
488,049 + -2.3
488,049 + -2.1
488,049 + +1.1
488,049 + +0.9
488,080 + -1.9
488,090 + +0.4
488,090 + +0.4
488,091 - +0.3
488,112 + -0.8
488,113 - -0.3
488,113 - +2.0
488,156 + -1.6
489,057 + -0.8
489,072 - +0.1
489,107 + -2.3
489,112 + -1.5
489,158 - -0.6
489,162 + -2.2
489,162 + -1.8
489,170 + -1.4
489,170 + +1.0
489,174 + +0.0
489,174 + +2.5
489,177 + -2.0
489,177 + -0.8
489,185 - -0.0
489,306 - -1.0
489,371 - +1.6
489,371 - -0.8
489,407 - +2.1
489,424 + +0.9
489,424 + -0.7
489,435 + BACOVA_03655 0.10 -1.7
489,436 - BACOVA_03655 0.10 +0.3
489,507 - BACOVA_03655 0.14 +0.6
489,508 + BACOVA_03655 0.14 +0.9
489,509 - BACOVA_03655 0.14 -1.1
489,509 - BACOVA_03655 0.14 -0.1
489,567 + BACOVA_03655 0.17 -1.7
489,582 + BACOVA_03655 0.18 -2.9
489,596 - BACOVA_03655 0.19 -1.9
489,596 - BACOVA_03655 0.19 -1.3
489,713 + BACOVA_03655 0.24 -3.0
489,740 + BACOVA_03655 0.26 -3.1
489,741 - BACOVA_03655 0.26 +0.4
489,741 - BACOVA_03655 0.26 +3.1
489,770 - BACOVA_03655 0.27 -3.2
489,828 - BACOVA_03655 0.30 -2.2
489,854 + BACOVA_03655 0.32 +0.6
489,875 - BACOVA_03655 0.33 -3.5
489,875 - BACOVA_03655 0.33 -2.0
489,910 + BACOVA_03655 0.35 +0.3
489,914 + BACOVA_03655 0.35 +0.5
489,936 + BACOVA_03655 0.36 +0.5
489,954 + BACOVA_03655 0.37 -1.2
489,955 - BACOVA_03655 0.37 -1.7
489,967 - BACOVA_03655 0.37 -2.7
489,979 + BACOVA_03655 0.38 -1.2
490,050 - BACOVA_03655 0.42 -1.6

Or see this region's nucleotide sequence