Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03562 and BACOVA_03563 are separated by 91 nucleotides BACOVA_03563 and BACOVA_03564 are separated by 7 nucleotides BACOVA_03564 and BACOVA_03565 are separated by 134 nucleotides
BACOVA_03562: BACOVA_03562 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 339,278 to 343,339
_03562
BACOVA_03563: BACOVA_03563 - hypothetical protein, at 343,431 to 344,816
_03563
BACOVA_03564: BACOVA_03564 - RNA polymerase sigma-70 factor, at 344,824 to 345,333
_03564
BACOVA_03565: BACOVA_03565 - TonB-linked outer membrane protein, SusC/RagA family, at 345,468 to 348,704
_03565
Position (kb) 343
344
345 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 342.482 kb on + strand, within BACOVA_03562 at 342.485 kb on - strand, within BACOVA_03562 at 342.485 kb on - strand, within BACOVA_03562 at 342.532 kb on + strand, within BACOVA_03562 at 342.533 kb on - strand, within BACOVA_03562 at 342.533 kb on - strand, within BACOVA_03562 at 342.562 kb on - strand, within BACOVA_03562 at 342.580 kb on + strand, within BACOVA_03562 at 342.693 kb on + strand, within BACOVA_03562 at 342.697 kb on + strand, within BACOVA_03562 at 342.697 kb on + strand, within BACOVA_03562 at 342.698 kb on - strand, within BACOVA_03562 at 342.698 kb on - strand, within BACOVA_03562 at 342.698 kb on - strand, within BACOVA_03562 at 342.794 kb on - strand, within BACOVA_03562 at 342.803 kb on - strand, within BACOVA_03562 at 342.803 kb on - strand, within BACOVA_03562 at 342.820 kb on + strand, within BACOVA_03562 at 342.848 kb on + strand, within BACOVA_03562 at 342.850 kb on + strand, within BACOVA_03562 at 342.869 kb on + strand, within BACOVA_03562 at 342.869 kb on + strand, within BACOVA_03562 at 342.869 kb on + strand, within BACOVA_03562 at 342.869 kb on + strand, within BACOVA_03562 at 342.870 kb on - strand, within BACOVA_03562 at 342.870 kb on - strand, within BACOVA_03562 at 342.873 kb on + strand, within BACOVA_03562 at 342.874 kb on - strand, within BACOVA_03562 at 342.890 kb on + strand, within BACOVA_03562 at 342.891 kb on - strand, within BACOVA_03562 at 342.897 kb on + strand, within BACOVA_03562 at 342.897 kb on + strand, within BACOVA_03562 at 342.917 kb on - strand, within BACOVA_03562 at 342.986 kb on - strand at 342.991 kb on + strand at 342.991 kb on + strand at 342.991 kb on + strand at 342.992 kb on - strand at 342.995 kb on - strand at 343.002 kb on + strand at 343.003 kb on - strand at 343.075 kb on + strand at 343.076 kb on - strand at 343.113 kb on + strand at 343.136 kb on - strand at 343.136 kb on - strand at 343.159 kb on + strand at 343.211 kb on + strand at 343.211 kb on + strand at 343.213 kb on + strand at 343.217 kb on - strand at 343.259 kb on + strand at 343.271 kb on + strand at 343.334 kb on - strand at 343.338 kb on - strand at 343.360 kb on + strand at 343.360 kb on + strand at 343.361 kb on - strand at 343.361 kb on - strand at 343.389 kb on + strand at 343.390 kb on - strand at 343.391 kb on - strand at 343.407 kb on + strand at 343.410 kb on + strand at 343.410 kb on + strand at 343.424 kb on + strand at 343.424 kb on + strand at 343.520 kb on + strand at 343.541 kb on - strand at 343.541 kb on - strand at 343.546 kb on + strand at 343.608 kb on - strand, within BACOVA_03563 at 343.623 kb on + strand, within BACOVA_03563 at 343.623 kb on + strand, within BACOVA_03563 at 343.624 kb on - strand, within BACOVA_03563 at 343.624 kb on - strand, within BACOVA_03563 at 343.624 kb on - strand, within BACOVA_03563 at 343.626 kb on - strand, within BACOVA_03563 at 343.639 kb on + strand, within BACOVA_03563 at 343.640 kb on - strand, within BACOVA_03563 at 343.667 kb on - strand, within BACOVA_03563 at 343.671 kb on - strand, within BACOVA_03563 at 343.744 kb on + strand, within BACOVA_03563 at 343.745 kb on - strand, within BACOVA_03563 at 343.820 kb on - strand, within BACOVA_03563 at 343.820 kb on - strand, within BACOVA_03563 at 343.839 kb on - strand, within BACOVA_03563 at 343.839 kb on - strand, within BACOVA_03563 at 343.840 kb on + strand, within BACOVA_03563 at 343.862 kb on - strand, within BACOVA_03563 at 343.961 kb on - strand, within BACOVA_03563 at 343.975 kb on + strand, within BACOVA_03563 at 343.984 kb on + strand, within BACOVA_03563 at 344.004 kb on + strand, within BACOVA_03563 at 344.005 kb on - strand, within BACOVA_03563 at 344.073 kb on + strand, within BACOVA_03563 at 344.073 kb on + strand, within BACOVA_03563 at 344.074 kb on - strand, within BACOVA_03563 at 344.074 kb on - strand, within BACOVA_03563 at 344.082 kb on + strand, within BACOVA_03563 at 344.082 kb on + strand, within BACOVA_03563 at 344.083 kb on - strand, within BACOVA_03563 at 344.084 kb on + strand, within BACOVA_03563 at 344.084 kb on + strand, within BACOVA_03563 at 344.084 kb on + strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.085 kb on - strand, within BACOVA_03563 at 344.105 kb on + strand, within BACOVA_03563 at 344.110 kb on - strand, within BACOVA_03563 at 344.110 kb on - strand, within BACOVA_03563 at 344.144 kb on + strand, within BACOVA_03563 at 344.153 kb on + strand, within BACOVA_03563 at 344.185 kb on - strand, within BACOVA_03563 at 344.200 kb on - strand, within BACOVA_03563 at 344.217 kb on - strand, within BACOVA_03563 at 344.221 kb on + strand, within BACOVA_03563 at 344.266 kb on + strand, within BACOVA_03563 at 344.267 kb on - strand, within BACOVA_03563 at 344.271 kb on + strand, within BACOVA_03563 at 344.272 kb on - strand, within BACOVA_03563 at 344.276 kb on + strand, within BACOVA_03563 at 344.276 kb on + strand, within BACOVA_03563 at 344.277 kb on - strand, within BACOVA_03563 at 344.277 kb on - strand, within BACOVA_03563 at 344.292 kb on + strand, within BACOVA_03563 at 344.359 kb on - strand, within BACOVA_03563 at 344.376 kb on - strand, within BACOVA_03563 at 344.396 kb on + strand, within BACOVA_03563 at 344.396 kb on + strand, within BACOVA_03563 at 344.526 kb on - strand, within BACOVA_03563 at 344.526 kb on - strand, within BACOVA_03563 at 344.543 kb on + strand, within BACOVA_03563 at 344.544 kb on - strand, within BACOVA_03563 at 344.662 kb on - strand, within BACOVA_03563 at 344.664 kb on + strand, within BACOVA_03563 at 344.664 kb on + strand, within BACOVA_03563 at 344.665 kb on - strand, within BACOVA_03563 at 344.665 kb on - strand, within BACOVA_03563 at 344.677 kb on + strand, within BACOVA_03563 at 344.677 kb on + strand, within BACOVA_03563 at 344.684 kb on + strand at 344.684 kb on + strand at 344.706 kb on + strand at 344.760 kb on + strand at 344.761 kb on - strand at 344.799 kb on + strand at 344.800 kb on - strand at 344.802 kb on + strand at 344.803 kb on - strand at 344.804 kb on + strand at 344.819 kb on + strand at 344.848 kb on - strand at 344.848 kb on - strand at 344.848 kb on - strand at 344.853 kb on - strand at 344.853 kb on - strand at 344.853 kb on - strand at 344.863 kb on + strand at 344.865 kb on + strand at 344.865 kb on + strand at 344.866 kb on - strand at 344.882 kb on + strand, within BACOVA_03564 at 344.897 kb on + strand, within BACOVA_03564 at 344.902 kb on + strand, within BACOVA_03564 at 344.949 kb on - strand, within BACOVA_03564 at 344.971 kb on - strand, within BACOVA_03564 at 345.040 kb on + strand, within BACOVA_03564 at 345.056 kb on - strand, within BACOVA_03564 at 345.079 kb on + strand, within BACOVA_03564 at 345.082 kb on - strand, within BACOVA_03564 at 345.085 kb on + strand, within BACOVA_03564 at 345.085 kb on + strand, within BACOVA_03564 at 345.085 kb on + strand, within BACOVA_03564 at 345.105 kb on + strand, within BACOVA_03564 at 345.106 kb on - strand, within BACOVA_03564 at 345.193 kb on - strand, within BACOVA_03564 at 345.199 kb on + strand, within BACOVA_03564 at 345.277 kb on + strand, within BACOVA_03564 at 345.313 kb on + strand at 345.316 kb on - strand at 345.334 kb on + strand at 345.334 kb on + strand at 345.334 kb on + strand at 345.353 kb on + strand at 345.354 kb on - strand at 345.354 kb on - strand at 345.439 kb on - strand at 345.446 kb on + strand at 345.447 kb on - strand at 345.490 kb on + strand at 345.491 kb on - strand at 345.491 kb on - strand at 345.494 kb on + strand at 345.495 kb on - strand at 345.495 kb on - strand at 345.495 kb on - strand at 345.499 kb on + strand at 345.518 kb on - strand at 345.618 kb on - strand at 345.618 kb on - strand at 345.693 kb on - strand at 345.714 kb on - strand at 345.714 kb on - strand at 345.725 kb on - strand at 345.755 kb on + strand at 345.781 kb on + strand at 345.806 kb on - strand, within BACOVA_03565
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C) remove 342,482 + BACOVA_03562 0.79 -1.1 342,485 - BACOVA_03562 0.79 +0.8 342,485 - BACOVA_03562 0.79 +1.4 342,532 + BACOVA_03562 0.80 +1.4 342,533 - BACOVA_03562 0.80 +3.9 342,533 - BACOVA_03562 0.80 -1.5 342,562 - BACOVA_03562 0.81 -2.8 342,580 + BACOVA_03562 0.81 -0.1 342,693 + BACOVA_03562 0.84 -0.8 342,697 + BACOVA_03562 0.84 -1.5 342,697 + BACOVA_03562 0.84 -0.4 342,698 - BACOVA_03562 0.84 -1.3 342,698 - BACOVA_03562 0.84 +1.5 342,698 - BACOVA_03562 0.84 -1.7 342,794 - BACOVA_03562 0.87 -0.8 342,803 - BACOVA_03562 0.87 +0.6 342,803 - BACOVA_03562 0.87 +2.6 342,820 + BACOVA_03562 0.87 -0.8 342,848 + BACOVA_03562 0.88 -3.2 342,850 + BACOVA_03562 0.88 -1.2 342,869 + BACOVA_03562 0.88 +1.7 342,869 + BACOVA_03562 0.88 +1.2 342,869 + BACOVA_03562 0.88 +0.1 342,869 + BACOVA_03562 0.88 +0.1 342,870 - BACOVA_03562 0.88 -1.5 342,870 - BACOVA_03562 0.88 +1.0 342,873 + BACOVA_03562 0.89 -0.7 342,874 - BACOVA_03562 0.89 +0.9 342,890 + BACOVA_03562 0.89 -0.2 342,891 - BACOVA_03562 0.89 -0.5 342,897 + BACOVA_03562 0.89 +0.3 342,897 + BACOVA_03562 0.89 +1.3 342,917 - BACOVA_03562 0.90 -1.9 342,986 - +0.1 342,991 + -0.4 342,991 + -4.3 342,991 + +4.0 342,992 - +0.3 342,995 - -1.4 343,002 + +1.1 343,003 - +2.6 343,075 + -0.9 343,076 - -1.2 343,113 + +0.9 343,136 - -0.2 343,136 - -0.6 343,159 + +0.1 343,211 + +0.4 343,211 + +0.0 343,213 + -0.1 343,217 - +0.3 343,259 + +2.0 343,271 + -2.6 343,334 - +1.4 343,338 - -0.5 343,360 + -1.1 343,360 + -2.0 343,361 - +0.9 343,361 - -0.8 343,389 + -0.7 343,390 - +0.1 343,391 - +1.1 343,407 + +0.9 343,410 + -0.5 343,410 + -2.4 343,424 + -0.1 343,424 + -1.9 343,520 + +0.2 343,541 - -1.5 343,541 - -0.4 343,546 + -1.5 343,608 - BACOVA_03563 0.13 -3.2 343,623 + BACOVA_03563 0.14 +0.6 343,623 + BACOVA_03563 0.14 +3.4 343,624 - BACOVA_03563 0.14 +2.6 343,624 - BACOVA_03563 0.14 +1.4 343,624 - BACOVA_03563 0.14 +1.0 343,626 - BACOVA_03563 0.14 +0.7 343,639 + BACOVA_03563 0.15 -1.2 343,640 - BACOVA_03563 0.15 +0.4 343,667 - BACOVA_03563 0.17 -3.2 343,671 - BACOVA_03563 0.17 -1.0 343,744 + BACOVA_03563 0.23 +1.2 343,745 - BACOVA_03563 0.23 +1.0 343,820 - BACOVA_03563 0.28 +0.1 343,820 - BACOVA_03563 0.28 -1.7 343,839 - BACOVA_03563 0.29 +1.1 343,839 - BACOVA_03563 0.29 +0.5 343,840 + BACOVA_03563 0.30 +3.9 343,862 - BACOVA_03563 0.31 -0.3 343,961 - BACOVA_03563 0.38 -1.2 343,975 + BACOVA_03563 0.39 -0.8 343,984 + BACOVA_03563 0.40 +0.4 344,004 + BACOVA_03563 0.41 -0.5 344,005 - BACOVA_03563 0.41 +1.4 344,073 + BACOVA_03563 0.46 -1.8 344,073 + BACOVA_03563 0.46 -1.0 344,074 - BACOVA_03563 0.46 +1.5 344,074 - BACOVA_03563 0.46 -0.6 344,082 + BACOVA_03563 0.47 +2.2 344,082 + BACOVA_03563 0.47 +0.9 344,083 - BACOVA_03563 0.47 -0.1 344,084 + BACOVA_03563 0.47 +2.6 344,084 + BACOVA_03563 0.47 -1.5 344,084 + BACOVA_03563 0.47 -3.0 344,085 - BACOVA_03563 0.47 +0.2 344,085 - BACOVA_03563 0.47 +3.1 344,085 - BACOVA_03563 0.47 -0.6 344,085 - BACOVA_03563 0.47 -0.9 344,085 - BACOVA_03563 0.47 -1.0 344,105 + BACOVA_03563 0.49 -1.0 344,110 - BACOVA_03563 0.49 +0.5 344,110 - BACOVA_03563 0.49 -0.3 344,144 + BACOVA_03563 0.51 -0.8 344,153 + BACOVA_03563 0.52 -1.0 344,185 - BACOVA_03563 0.54 +0.3 344,200 - BACOVA_03563 0.55 -2.0 344,217 - BACOVA_03563 0.57 -2.8 344,221 + BACOVA_03563 0.57 -0.9 344,266 + BACOVA_03563 0.60 -0.7 344,267 - BACOVA_03563 0.60 -1.4 344,271 + BACOVA_03563 0.61 -3.8 344,272 - BACOVA_03563 0.61 -2.3 344,276 + BACOVA_03563 0.61 -2.9 344,276 + BACOVA_03563 0.61 -0.9 344,277 - BACOVA_03563 0.61 -0.9 344,277 - BACOVA_03563 0.61 -1.6 344,292 + BACOVA_03563 0.62 -1.0 344,359 - BACOVA_03563 0.67 +0.3 344,376 - BACOVA_03563 0.68 -0.8 344,396 + BACOVA_03563 0.70 -1.2 344,396 + BACOVA_03563 0.70 -1.4 344,526 - BACOVA_03563 0.79 -0.8 344,526 - BACOVA_03563 0.79 +0.7 344,543 + BACOVA_03563 0.80 +2.1 344,544 - BACOVA_03563 0.80 -2.9 344,662 - BACOVA_03563 0.89 +0.3 344,664 + BACOVA_03563 0.89 +2.1 344,664 + BACOVA_03563 0.89 -0.8 344,665 - BACOVA_03563 0.89 -1.5 344,665 - BACOVA_03563 0.89 -1.1 344,677 + BACOVA_03563 0.90 +0.3 344,677 + BACOVA_03563 0.90 +3.3 344,684 + -0.4 344,684 + -0.6 344,706 + -0.3 344,760 + -1.5 344,761 - -1.7 344,799 + -2.1 344,800 - +1.2 344,802 + -2.6 344,803 - -0.9 344,804 + -3.0 344,819 + +1.7 344,848 - +3.1 344,848 - +0.3 344,848 - +0.7 344,853 - -3.0 344,853 - -0.8 344,853 - -1.9 344,863 + +0.6 344,865 + +3.3 344,865 + -0.8 344,866 - -2.1 344,882 + BACOVA_03564 0.11 -0.3 344,897 + BACOVA_03564 0.14 +2.2 344,902 + BACOVA_03564 0.15 -0.8 344,949 - BACOVA_03564 0.25 -2.3 344,971 - BACOVA_03564 0.29 -0.6 345,040 + BACOVA_03564 0.42 +0.9 345,056 - BACOVA_03564 0.45 -1.5 345,079 + BACOVA_03564 0.50 +0.9 345,082 - BACOVA_03564 0.51 +0.4 345,085 + BACOVA_03564 0.51 -1.3 345,085 + BACOVA_03564 0.51 +0.1 345,085 + BACOVA_03564 0.51 -1.5 345,105 + BACOVA_03564 0.55 +1.3 345,106 - BACOVA_03564 0.55 +0.7 345,193 - BACOVA_03564 0.72 -1.5 345,199 + BACOVA_03564 0.74 -2.6 345,277 + BACOVA_03564 0.89 -1.2 345,313 + +2.7 345,316 - -1.5 345,334 + -2.1 345,334 + -1.2 345,334 + -1.3 345,353 + -0.5 345,354 - +1.6 345,354 - -0.6 345,439 - +1.7 345,446 + -1.7 345,447 - -2.1 345,490 + +0.7 345,491 - -2.9 345,491 - -1.3 345,494 + +1.1 345,495 - -0.1 345,495 - -2.5 345,495 - -1.3 345,499 + -0.8 345,518 - +0.7 345,618 - +0.1 345,618 - +0.1 345,693 - -1.6 345,714 - -2.4 345,714 - -2.9 345,725 - +0.0 345,755 + -1.1 345,781 + +3.2 345,806 - BACOVA_03565 0.10 +3.6
Or see this region's nucleotide sequence