Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03260

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03259 and BACOVA_03260 are separated by 2 nucleotidesBACOVA_03260 and BACOVA_03261 are separated by 13 nucleotides BACOVA_03259: BACOVA_03259 - transporter, major facilitator family protein, at 352,596 to 353,765 _03259 BACOVA_03260: BACOVA_03260 - cyclic nucleotide-binding domain protein, at 353,768 to 354,346 _03260 BACOVA_03261: BACOVA_03261 - MATE efflux family protein, at 354,360 to 355,715 _03261 Position (kb) 353 354 355Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 352.809 kb on - strand, within BACOVA_03259at 352.844 kb on - strand, within BACOVA_03259at 352.855 kb on + strand, within BACOVA_03259at 352.856 kb on - strand, within BACOVA_03259at 352.856 kb on - strand, within BACOVA_03259at 352.856 kb on - strand, within BACOVA_03259at 352.858 kb on + strand, within BACOVA_03259at 352.872 kb on + strand, within BACOVA_03259at 352.875 kb on - strand, within BACOVA_03259at 352.875 kb on - strand, within BACOVA_03259at 352.890 kb on - strand, within BACOVA_03259at 352.890 kb on - strand, within BACOVA_03259at 352.890 kb on - strand, within BACOVA_03259at 352.894 kb on + strand, within BACOVA_03259at 352.895 kb on - strand, within BACOVA_03259at 352.899 kb on + strand, within BACOVA_03259at 352.899 kb on + strand, within BACOVA_03259at 352.900 kb on - strand, within BACOVA_03259at 352.900 kb on - strand, within BACOVA_03259at 352.955 kb on - strand, within BACOVA_03259at 352.966 kb on + strand, within BACOVA_03259at 352.971 kb on - strand, within BACOVA_03259at 352.981 kb on + strand, within BACOVA_03259at 352.989 kb on - strand, within BACOVA_03259at 352.991 kb on + strand, within BACOVA_03259at 353.051 kb on - strand, within BACOVA_03259at 353.226 kb on - strand, within BACOVA_03259at 353.261 kb on + strand, within BACOVA_03259at 353.273 kb on - strand, within BACOVA_03259at 353.300 kb on + strand, within BACOVA_03259at 353.380 kb on + strand, within BACOVA_03259at 353.426 kb on - strand, within BACOVA_03259at 353.444 kb on + strand, within BACOVA_03259at 353.445 kb on - strand, within BACOVA_03259at 353.471 kb on + strand, within BACOVA_03259at 353.496 kb on - strand, within BACOVA_03259at 353.500 kb on + strand, within BACOVA_03259at 353.559 kb on + strand, within BACOVA_03259at 353.641 kb on + strand, within BACOVA_03259at 353.641 kb on + strand, within BACOVA_03259at 353.642 kb on - strand, within BACOVA_03259at 353.646 kb on - strand, within BACOVA_03259at 353.678 kb on - strandat 353.707 kb on + strandat 353.730 kb on + strandat 353.730 kb on + strandat 353.731 kb on - strandat 353.731 kb on - strandat 353.763 kb on + strandat 353.764 kb on - strandat 353.767 kb on - strandat 353.786 kb on + strandat 353.804 kb on - strandat 353.850 kb on - strand, within BACOVA_03260at 353.856 kb on - strand, within BACOVA_03260at 353.859 kb on + strand, within BACOVA_03260at 353.859 kb on + strand, within BACOVA_03260at 353.898 kb on + strand, within BACOVA_03260at 353.899 kb on - strand, within BACOVA_03260at 354.012 kb on - strand, within BACOVA_03260at 354.042 kb on + strand, within BACOVA_03260at 354.071 kb on - strand, within BACOVA_03260at 354.075 kb on - strand, within BACOVA_03260at 354.078 kb on - strand, within BACOVA_03260at 354.084 kb on + strand, within BACOVA_03260at 354.085 kb on - strand, within BACOVA_03260at 354.095 kb on + strand, within BACOVA_03260at 354.095 kb on + strand, within BACOVA_03260at 354.095 kb on + strand, within BACOVA_03260at 354.096 kb on - strand, within BACOVA_03260at 354.149 kb on - strand, within BACOVA_03260at 354.172 kb on - strand, within BACOVA_03260at 354.175 kb on - strand, within BACOVA_03260at 354.204 kb on + strand, within BACOVA_03260at 354.233 kb on + strand, within BACOVA_03260at 354.237 kb on - strand, within BACOVA_03260at 354.239 kb on + strand, within BACOVA_03260at 354.260 kb on + strand, within BACOVA_03260at 354.271 kb on + strand, within BACOVA_03260at 354.272 kb on - strand, within BACOVA_03260at 354.274 kb on - strand, within BACOVA_03260at 354.291 kb on - strandat 354.306 kb on - strandat 354.306 kb on - strandat 354.313 kb on - strandat 354.313 kb on - strandat 354.317 kb on - strandat 354.347 kb on - strandat 354.358 kb on - strandat 354.361 kb on + strandat 354.362 kb on - strandat 354.424 kb on - strandat 354.461 kb on + strandat 354.500 kb on + strand, within BACOVA_03261at 354.504 kb on + strand, within BACOVA_03261at 354.504 kb on + strand, within BACOVA_03261at 354.504 kb on + strand, within BACOVA_03261at 354.505 kb on - strand, within BACOVA_03261at 354.505 kb on - strand, within BACOVA_03261at 354.528 kb on - strand, within BACOVA_03261at 354.617 kb on - strand, within BACOVA_03261at 354.617 kb on - strand, within BACOVA_03261at 354.636 kb on + strand, within BACOVA_03261at 354.637 kb on - strand, within BACOVA_03261at 354.637 kb on - strand, within BACOVA_03261at 354.652 kb on + strand, within BACOVA_03261at 354.652 kb on + strand, within BACOVA_03261at 354.693 kb on + strand, within BACOVA_03261at 354.694 kb on - strand, within BACOVA_03261at 354.697 kb on - strand, within BACOVA_03261at 354.730 kb on - strand, within BACOVA_03261at 354.836 kb on - strand, within BACOVA_03261at 354.836 kb on - strand, within BACOVA_03261at 354.836 kb on - strand, within BACOVA_03261at 354.862 kb on + strand, within BACOVA_03261at 354.919 kb on + strand, within BACOVA_03261at 354.984 kb on - strand, within BACOVA_03261at 355.014 kb on + strand, within BACOVA_03261at 355.032 kb on + strand, within BACOVA_03261at 355.033 kb on - strand, within BACOVA_03261at 355.048 kb on - strand, within BACOVA_03261at 355.075 kb on - strand, within BACOVA_03261at 355.167 kb on + strand, within BACOVA_03261at 355.167 kb on + strand, within BACOVA_03261at 355.169 kb on + strand, within BACOVA_03261at 355.169 kb on + strand, within BACOVA_03261at 355.170 kb on - strand, within BACOVA_03261at 355.170 kb on - strand, within BACOVA_03261at 355.170 kb on - strand, within BACOVA_03261at 355.170 kb on - strand, within BACOVA_03261at 355.171 kb on + strand, within BACOVA_03261at 355.172 kb on - strand, within BACOVA_03261at 355.172 kb on - strand, within BACOVA_03261at 355.184 kb on + strand, within BACOVA_03261at 355.184 kb on + strand, within BACOVA_03261at 355.192 kb on - strand, within BACOVA_03261at 355.208 kb on + strand, within BACOVA_03261at 355.208 kb on + strand, within BACOVA_03261at 355.208 kb on + strand, within BACOVA_03261at 355.220 kb on + strand, within BACOVA_03261at 355.221 kb on - strand, within BACOVA_03261at 355.221 kb on - strand, within BACOVA_03261at 355.222 kb on + strand, within BACOVA_03261at 355.223 kb on - strand, within BACOVA_03261at 355.256 kb on + strand, within BACOVA_03261at 355.257 kb on - strand, within BACOVA_03261at 355.257 kb on - strand, within BACOVA_03261at 355.261 kb on - strand, within BACOVA_03261at 355.308 kb on - strand, within BACOVA_03261at 355.309 kb on + strand, within BACOVA_03261at 355.310 kb on - strand, within BACOVA_03261

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Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
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352,809 - BACOVA_03259 0.18 +1.7
352,844 - BACOVA_03259 0.21 -0.9
352,855 + BACOVA_03259 0.22 +1.6
352,856 - BACOVA_03259 0.22 +0.7
352,856 - BACOVA_03259 0.22 -2.9
352,856 - BACOVA_03259 0.22 -0.9
352,858 + BACOVA_03259 0.22 -0.7
352,872 + BACOVA_03259 0.24 -3.7
352,875 - BACOVA_03259 0.24 +1.3
352,875 - BACOVA_03259 0.24 -1.3
352,890 - BACOVA_03259 0.25 -0.8
352,890 - BACOVA_03259 0.25 -1.6
352,890 - BACOVA_03259 0.25 -1.1
352,894 + BACOVA_03259 0.25 -1.1
352,895 - BACOVA_03259 0.26 +2.1
352,899 + BACOVA_03259 0.26 -1.6
352,899 + BACOVA_03259 0.26 +0.5
352,900 - BACOVA_03259 0.26 +0.0
352,900 - BACOVA_03259 0.26 -0.7
352,955 - BACOVA_03259 0.31 +1.8
352,966 + BACOVA_03259 0.32 +1.3
352,971 - BACOVA_03259 0.32 -1.7
352,981 + BACOVA_03259 0.33 +0.4
352,989 - BACOVA_03259 0.34 -2.4
352,991 + BACOVA_03259 0.34 -2.9
353,051 - BACOVA_03259 0.39 +0.9
353,226 - BACOVA_03259 0.54 +0.3
353,261 + BACOVA_03259 0.57 -0.0
353,273 - BACOVA_03259 0.58 -2.9
353,300 + BACOVA_03259 0.60 -2.2
353,380 + BACOVA_03259 0.67 -0.9
353,426 - BACOVA_03259 0.71 -0.3
353,444 + BACOVA_03259 0.72 -0.5
353,445 - BACOVA_03259 0.73 -1.2
353,471 + BACOVA_03259 0.75 -0.0
353,496 - BACOVA_03259 0.77 -0.4
353,500 + BACOVA_03259 0.77 -1.7
353,559 + BACOVA_03259 0.82 +1.2
353,641 + BACOVA_03259 0.89 +2.0
353,641 + BACOVA_03259 0.89 +1.4
353,642 - BACOVA_03259 0.89 -0.6
353,646 - BACOVA_03259 0.90 +3.8
353,678 - -3.0
353,707 + -1.6
353,730 + -1.5
353,730 + +1.4
353,731 - -1.0
353,731 - -2.2
353,763 + +1.3
353,764 - +1.3
353,767 - -0.0
353,786 + -1.0
353,804 - +1.0
353,850 - BACOVA_03260 0.14 -1.5
353,856 - BACOVA_03260 0.15 +0.1
353,859 + BACOVA_03260 0.16 -2.4
353,859 + BACOVA_03260 0.16 -0.3
353,898 + BACOVA_03260 0.22 +1.1
353,899 - BACOVA_03260 0.23 +0.2
354,012 - BACOVA_03260 0.42 -1.6
354,042 + BACOVA_03260 0.47 +0.3
354,071 - BACOVA_03260 0.52 +0.3
354,075 - BACOVA_03260 0.53 -0.1
354,078 - BACOVA_03260 0.54 +2.0
354,084 + BACOVA_03260 0.55 +1.8
354,085 - BACOVA_03260 0.55 +0.8
354,095 + BACOVA_03260 0.56 +0.0
354,095 + BACOVA_03260 0.56 +2.6
354,095 + BACOVA_03260 0.56 -0.1
354,096 - BACOVA_03260 0.57 +2.0
354,149 - BACOVA_03260 0.66 -0.1
354,172 - BACOVA_03260 0.70 -0.3
354,175 - BACOVA_03260 0.70 -0.7
354,204 + BACOVA_03260 0.75 -0.6
354,233 + BACOVA_03260 0.80 +2.5
354,237 - BACOVA_03260 0.81 -2.3
354,239 + BACOVA_03260 0.81 +1.6
354,260 + BACOVA_03260 0.85 +0.5
354,271 + BACOVA_03260 0.87 +3.1
354,272 - BACOVA_03260 0.87 +0.7
354,274 - BACOVA_03260 0.87 +0.3
354,291 - +3.7
354,306 - +1.6
354,306 - -0.2
354,313 - +2.3
354,313 - +2.6
354,317 - -1.1
354,347 - +1.3
354,358 - +4.4
354,361 + -3.2
354,362 - +0.8
354,424 - +1.5
354,461 + -1.7
354,500 + BACOVA_03261 0.10 -0.8
354,504 + BACOVA_03261 0.11 +0.8
354,504 + BACOVA_03261 0.11 +1.0
354,504 + BACOVA_03261 0.11 -3.3
354,505 - BACOVA_03261 0.11 +0.4
354,505 - BACOVA_03261 0.11 +0.9
354,528 - BACOVA_03261 0.12 -1.9
354,617 - BACOVA_03261 0.19 +0.4
354,617 - BACOVA_03261 0.19 -2.8
354,636 + BACOVA_03261 0.20 +3.4
354,637 - BACOVA_03261 0.20 +2.4
354,637 - BACOVA_03261 0.20 -1.0
354,652 + BACOVA_03261 0.22 +1.2
354,652 + BACOVA_03261 0.22 -1.3
354,693 + BACOVA_03261 0.25 -0.1
354,694 - BACOVA_03261 0.25 +0.9
354,697 - BACOVA_03261 0.25 -0.9
354,730 - BACOVA_03261 0.27 -1.7
354,836 - BACOVA_03261 0.35 -0.3
354,836 - BACOVA_03261 0.35 -0.7
354,836 - BACOVA_03261 0.35 -2.3
354,862 + BACOVA_03261 0.37 -3.2
354,919 + BACOVA_03261 0.41 +0.4
354,984 - BACOVA_03261 0.46 +0.4
355,014 + BACOVA_03261 0.48 -0.8
355,032 + BACOVA_03261 0.50 +0.7
355,033 - BACOVA_03261 0.50 -0.2
355,048 - BACOVA_03261 0.51 -0.7
355,075 - BACOVA_03261 0.53 +3.8
355,167 + BACOVA_03261 0.60 -1.9
355,167 + BACOVA_03261 0.60 +2.6
355,169 + BACOVA_03261 0.60 +0.9
355,169 + BACOVA_03261 0.60 +1.3
355,170 - BACOVA_03261 0.60 -1.4
355,170 - BACOVA_03261 0.60 +0.6
355,170 - BACOVA_03261 0.60 +1.2
355,170 - BACOVA_03261 0.60 -0.3
355,171 + BACOVA_03261 0.60 -0.4
355,172 - BACOVA_03261 0.60 -2.3
355,172 - BACOVA_03261 0.60 +0.7
355,184 + BACOVA_03261 0.61 -0.6
355,184 + BACOVA_03261 0.61 -0.1
355,192 - BACOVA_03261 0.61 -3.2
355,208 + BACOVA_03261 0.63 +1.5
355,208 + BACOVA_03261 0.63 -0.7
355,208 + BACOVA_03261 0.63 -2.1
355,220 + BACOVA_03261 0.63 +1.2
355,221 - BACOVA_03261 0.63 +1.3
355,221 - BACOVA_03261 0.63 -1.8
355,222 + BACOVA_03261 0.64 -1.6
355,223 - BACOVA_03261 0.64 -0.9
355,256 + BACOVA_03261 0.66 -1.1
355,257 - BACOVA_03261 0.66 -1.0
355,257 - BACOVA_03261 0.66 -1.8
355,261 - BACOVA_03261 0.66 +0.1
355,308 - BACOVA_03261 0.70 +0.1
355,309 + BACOVA_03261 0.70 -0.7
355,310 - BACOVA_03261 0.70 -1.7

Or see this region's nucleotide sequence