Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03127 and BACOVA_03126 overlap by 134 nucleotides BACOVA_03126 and BACOVA_03128 are separated by 80 nucleotides BACOVA_03128 and BACOVA_03129 are separated by 89 nucleotides BACOVA_03129 and BACOVA_03130 are separated by 229 nucleotides
BACOVA_03127: BACOVA_03127 - TonB-linked outer membrane protein, SusC/RagA family, at 217,709 to 221,056
_03127
BACOVA_03126: BACOVA_03126 - hypothetical protein, at 220,923 to 221,135
_03126
BACOVA_03128: BACOVA_03128 - sigma factor regulatory protein, FecR/PupR family, at 221,216 to 222,211
_03128
BACOVA_03129: BACOVA_03129 - Sigma-70 region 2, at 222,301 to 222,891
_03129
BACOVA_03130: BACOVA_03130 - transporter, major facilitator family protein, at 223,121 to 224,446
_03130
Position (kb) 221
222
223 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 220.223 kb on - strand, within BACOVA_03127 at 220.223 kb on - strand, within BACOVA_03127 at 220.262 kb on - strand, within BACOVA_03127 at 220.304 kb on + strand, within BACOVA_03127 at 220.304 kb on + strand, within BACOVA_03127 at 220.328 kb on + strand, within BACOVA_03127 at 220.348 kb on + strand, within BACOVA_03127 at 220.379 kb on + strand, within BACOVA_03127 at 220.380 kb on - strand, within BACOVA_03127 at 220.383 kb on - strand, within BACOVA_03127 at 220.418 kb on + strand, within BACOVA_03127 at 220.434 kb on - strand, within BACOVA_03127 at 220.434 kb on - strand, within BACOVA_03127 at 220.434 kb on - strand, within BACOVA_03127 at 220.434 kb on - strand, within BACOVA_03127 at 220.460 kb on - strand, within BACOVA_03127 at 220.460 kb on - strand, within BACOVA_03127 at 220.460 kb on - strand, within BACOVA_03127 at 220.475 kb on - strand, within BACOVA_03127 at 220.526 kb on + strand, within BACOVA_03127 at 220.527 kb on - strand, within BACOVA_03127 at 220.527 kb on - strand, within BACOVA_03127 at 220.530 kb on + strand, within BACOVA_03127 at 220.531 kb on - strand, within BACOVA_03127 at 220.531 kb on - strand, within BACOVA_03127 at 220.577 kb on - strand, within BACOVA_03127 at 220.591 kb on + strand, within BACOVA_03127 at 220.592 kb on - strand, within BACOVA_03127 at 220.592 kb on - strand, within BACOVA_03127 at 220.637 kb on + strand, within BACOVA_03127 at 220.637 kb on + strand, within BACOVA_03127 at 220.638 kb on - strand, within BACOVA_03127 at 220.638 kb on - strand, within BACOVA_03127 at 220.681 kb on + strand, within BACOVA_03127 at 220.681 kb on + strand, within BACOVA_03127 at 220.739 kb on + strand at 220.740 kb on - strand at 220.742 kb on + strand at 220.763 kb on - strand at 220.767 kb on - strand at 220.767 kb on - strand at 220.789 kb on + strand at 220.829 kb on - strand at 220.841 kb on + strand at 220.841 kb on + strand at 220.842 kb on - strand at 220.852 kb on - strand at 220.888 kb on + strand at 220.888 kb on + strand at 220.889 kb on - strand at 220.889 kb on - strand at 220.901 kb on + strand at 220.902 kb on - strand at 220.902 kb on - strand at 220.921 kb on + strand at 221.006 kb on - strand at 221.011 kb on + strand at 221.011 kb on + strand at 221.014 kb on + strand at 221.014 kb on + strand at 221.014 kb on + strand at 221.069 kb on - strand, within BACOVA_03126 at 221.069 kb on - strand, within BACOVA_03126 at 221.102 kb on + strand, within BACOVA_03126 at 221.103 kb on - strand, within BACOVA_03126 at 221.217 kb on + strand at 221.233 kb on + strand at 221.234 kb on - strand at 221.251 kb on + strand at 221.272 kb on - strand at 221.294 kb on + strand at 221.331 kb on + strand, within BACOVA_03128 at 221.333 kb on + strand, within BACOVA_03128 at 221.360 kb on + strand, within BACOVA_03128 at 221.360 kb on + strand, within BACOVA_03128 at 221.360 kb on + strand, within BACOVA_03128 at 221.360 kb on + strand, within BACOVA_03128 at 221.390 kb on + strand, within BACOVA_03128 at 221.480 kb on + strand, within BACOVA_03128 at 221.480 kb on + strand, within BACOVA_03128 at 221.485 kb on + strand, within BACOVA_03128 at 221.499 kb on + strand, within BACOVA_03128 at 221.563 kb on + strand, within BACOVA_03128 at 221.563 kb on + strand, within BACOVA_03128 at 221.573 kb on - strand, within BACOVA_03128 at 221.601 kb on - strand, within BACOVA_03128 at 221.602 kb on + strand, within BACOVA_03128 at 221.605 kb on + strand, within BACOVA_03128 at 221.605 kb on + strand, within BACOVA_03128 at 221.606 kb on - strand, within BACOVA_03128 at 221.660 kb on + strand, within BACOVA_03128 at 221.660 kb on + strand, within BACOVA_03128 at 221.660 kb on + strand, within BACOVA_03128 at 221.660 kb on + strand, within BACOVA_03128 at 221.661 kb on - strand, within BACOVA_03128 at 221.663 kb on - strand, within BACOVA_03128 at 221.664 kb on + strand, within BACOVA_03128 at 221.664 kb on + strand, within BACOVA_03128 at 221.680 kb on + strand, within BACOVA_03128 at 221.769 kb on + strand, within BACOVA_03128 at 221.792 kb on + strand, within BACOVA_03128 at 221.806 kb on + strand, within BACOVA_03128 at 221.852 kb on + strand, within BACOVA_03128 at 221.858 kb on + strand, within BACOVA_03128 at 221.858 kb on + strand, within BACOVA_03128 at 221.859 kb on - strand, within BACOVA_03128 at 221.897 kb on + strand, within BACOVA_03128 at 221.898 kb on - strand, within BACOVA_03128 at 221.898 kb on - strand, within BACOVA_03128 at 221.904 kb on + strand, within BACOVA_03128 at 221.909 kb on + strand, within BACOVA_03128 at 221.910 kb on - strand, within BACOVA_03128 at 221.972 kb on + strand, within BACOVA_03128 at 222.004 kb on + strand, within BACOVA_03128 at 222.004 kb on + strand, within BACOVA_03128 at 222.054 kb on + strand, within BACOVA_03128 at 222.054 kb on + strand, within BACOVA_03128 at 222.055 kb on - strand, within BACOVA_03128 at 222.058 kb on + strand, within BACOVA_03128 at 222.118 kb on + strand at 222.182 kb on + strand at 222.183 kb on - strand at 222.197 kb on - strand at 222.200 kb on + strand at 222.201 kb on - strand at 222.204 kb on - strand at 222.211 kb on + strand at 222.211 kb on + strand at 222.232 kb on + strand at 222.232 kb on + strand at 222.244 kb on + strand at 222.244 kb on + strand at 222.245 kb on - strand at 222.250 kb on - strand at 222.286 kb on + strand at 222.287 kb on - strand at 222.287 kb on - strand at 222.307 kb on - strand at 222.339 kb on - strand at 222.375 kb on + strand, within BACOVA_03129 at 222.375 kb on + strand, within BACOVA_03129 at 222.379 kb on + strand, within BACOVA_03129 at 222.380 kb on - strand, within BACOVA_03129 at 222.380 kb on - strand, within BACOVA_03129 at 222.380 kb on - strand, within BACOVA_03129 at 222.403 kb on - strand, within BACOVA_03129 at 222.441 kb on + strand, within BACOVA_03129 at 222.442 kb on - strand, within BACOVA_03129 at 222.442 kb on - strand, within BACOVA_03129 at 222.466 kb on + strand, within BACOVA_03129 at 222.487 kb on + strand, within BACOVA_03129 at 222.487 kb on + strand, within BACOVA_03129 at 222.487 kb on + strand, within BACOVA_03129 at 222.531 kb on - strand, within BACOVA_03129 at 222.531 kb on - strand, within BACOVA_03129 at 222.581 kb on + strand, within BACOVA_03129 at 222.581 kb on + strand, within BACOVA_03129 at 222.590 kb on + strand, within BACOVA_03129 at 222.648 kb on - strand, within BACOVA_03129 at 222.665 kb on + strand, within BACOVA_03129 at 222.706 kb on - strand, within BACOVA_03129 at 222.768 kb on - strand, within BACOVA_03129 at 222.786 kb on - strand, within BACOVA_03129 at 222.797 kb on - strand, within BACOVA_03129 at 222.822 kb on - strand, within BACOVA_03129 at 222.850 kb on + strand at 222.851 kb on - strand at 222.874 kb on + strand at 222.875 kb on - strand at 222.904 kb on + strand at 222.921 kb on - strand at 222.966 kb on + strand at 222.975 kb on + strand at 222.976 kb on - strand at 222.986 kb on - strand at 222.993 kb on - strand at 222.998 kb on + strand at 222.998 kb on + strand at 223.010 kb on - strand at 223.012 kb on - strand at 223.036 kb on + strand at 223.037 kb on - strand at 223.081 kb on + strand at 223.082 kb on - strand at 223.092 kb on + strand at 223.098 kb on + strand at 223.098 kb on + strand at 223.099 kb on - strand at 223.110 kb on + strand at 223.111 kb on - strand at 223.153 kb on + strand at 223.174 kb on - strand at 223.176 kb on + strand at 223.184 kb on - strand at 223.184 kb on - strand at 223.187 kb on + strand at 223.196 kb on + strand at 223.197 kb on - strand at 223.198 kb on + strand at 223.198 kb on + strand at 223.199 kb on - strand at 223.209 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C) remove 220,223 - BACOVA_03127 0.75 +5.3 220,223 - BACOVA_03127 0.75 -1.8 220,262 - BACOVA_03127 0.76 -1.4 220,304 + BACOVA_03127 0.78 +0.3 220,304 + BACOVA_03127 0.78 +1.3 220,328 + BACOVA_03127 0.78 +2.6 220,348 + BACOVA_03127 0.79 -1.3 220,379 + BACOVA_03127 0.80 -1.9 220,380 - BACOVA_03127 0.80 +1.8 220,383 - BACOVA_03127 0.80 +1.2 220,418 + BACOVA_03127 0.81 +1.7 220,434 - BACOVA_03127 0.81 -0.1 220,434 - BACOVA_03127 0.81 -0.2 220,434 - BACOVA_03127 0.81 +1.7 220,434 - BACOVA_03127 0.81 +0.6 220,460 - BACOVA_03127 0.82 -1.9 220,460 - BACOVA_03127 0.82 -1.4 220,460 - BACOVA_03127 0.82 -0.6 220,475 - BACOVA_03127 0.83 +2.1 220,526 + BACOVA_03127 0.84 +0.7 220,527 - BACOVA_03127 0.84 -1.9 220,527 - BACOVA_03127 0.84 -0.7 220,530 + BACOVA_03127 0.84 -0.4 220,531 - BACOVA_03127 0.84 +0.2 220,531 - BACOVA_03127 0.84 -0.0 220,577 - BACOVA_03127 0.86 +2.1 220,591 + BACOVA_03127 0.86 -1.9 220,592 - BACOVA_03127 0.86 +1.3 220,592 - BACOVA_03127 0.86 -0.8 220,637 + BACOVA_03127 0.87 -0.4 220,637 + BACOVA_03127 0.87 +0.6 220,638 - BACOVA_03127 0.87 +0.3 220,638 - BACOVA_03127 0.87 +0.7 220,681 + BACOVA_03127 0.89 -3.0 220,681 + BACOVA_03127 0.89 -0.2 220,739 + +4.3 220,740 - -1.2 220,742 + -1.4 220,763 - -2.0 220,767 - -0.6 220,767 - +1.3 220,789 + +2.0 220,829 - +0.2 220,841 + -3.9 220,841 + +1.6 220,842 - +0.7 220,852 - +0.7 220,888 + +3.4 220,888 + +3.2 220,889 - +0.2 220,889 - +2.2 220,901 + -1.6 220,902 - -0.8 220,902 - -0.9 220,921 + +0.1 221,006 - -0.8 221,011 + -1.6 221,011 + +0.8 221,014 + -0.5 221,014 + +1.2 221,014 + -2.9 221,069 - BACOVA_03126 0.69 -2.2 221,069 - BACOVA_03126 0.69 +2.7 221,102 + BACOVA_03126 0.84 -0.2 221,103 - BACOVA_03126 0.85 +0.1 221,217 + -0.8 221,233 + +2.2 221,234 - -0.7 221,251 + -2.1 221,272 - -0.1 221,294 + -0.1 221,331 + BACOVA_03128 0.12 +0.6 221,333 + BACOVA_03128 0.12 +0.1 221,360 + BACOVA_03128 0.14 -1.2 221,360 + BACOVA_03128 0.14 +1.0 221,360 + BACOVA_03128 0.14 -0.4 221,360 + BACOVA_03128 0.14 -1.2 221,390 + BACOVA_03128 0.17 +2.0 221,480 + BACOVA_03128 0.27 +2.2 221,480 + BACOVA_03128 0.27 -0.0 221,485 + BACOVA_03128 0.27 +3.4 221,499 + BACOVA_03128 0.28 +2.4 221,563 + BACOVA_03128 0.35 +3.6 221,563 + BACOVA_03128 0.35 -1.3 221,573 - BACOVA_03128 0.36 +0.1 221,601 - BACOVA_03128 0.39 +0.6 221,602 + BACOVA_03128 0.39 -0.8 221,605 + BACOVA_03128 0.39 -1.1 221,605 + BACOVA_03128 0.39 +1.9 221,606 - BACOVA_03128 0.39 +0.1 221,660 + BACOVA_03128 0.45 +0.6 221,660 + BACOVA_03128 0.45 -1.1 221,660 + BACOVA_03128 0.45 -0.4 221,660 + BACOVA_03128 0.45 -0.8 221,661 - BACOVA_03128 0.45 -1.0 221,663 - BACOVA_03128 0.45 +0.1 221,664 + BACOVA_03128 0.45 +2.5 221,664 + BACOVA_03128 0.45 -0.5 221,680 + BACOVA_03128 0.47 -0.4 221,769 + BACOVA_03128 0.56 +0.9 221,792 + BACOVA_03128 0.58 -0.9 221,806 + BACOVA_03128 0.59 -0.7 221,852 + BACOVA_03128 0.64 +5.2 221,858 + BACOVA_03128 0.64 -1.2 221,858 + BACOVA_03128 0.64 -1.6 221,859 - BACOVA_03128 0.65 +0.6 221,897 + BACOVA_03128 0.68 +3.4 221,898 - BACOVA_03128 0.68 -0.9 221,898 - BACOVA_03128 0.68 -0.6 221,904 + BACOVA_03128 0.69 -1.3 221,909 + BACOVA_03128 0.70 -1.7 221,910 - BACOVA_03128 0.70 +1.2 221,972 + BACOVA_03128 0.76 +0.2 222,004 + BACOVA_03128 0.79 -0.9 222,004 + BACOVA_03128 0.79 -1.0 222,054 + BACOVA_03128 0.84 -1.1 222,054 + BACOVA_03128 0.84 -0.3 222,055 - BACOVA_03128 0.84 -0.1 222,058 + BACOVA_03128 0.85 +0.9 222,118 + +0.6 222,182 + -1.3 222,183 - -2.4 222,197 - -0.6 222,200 + -2.4 222,201 - -0.7 222,204 - -1.0 222,211 + +3.5 222,211 + -0.9 222,232 + +2.3 222,232 + +1.2 222,244 + -1.9 222,244 + -0.8 222,245 - -2.1 222,250 - -0.8 222,286 + -0.7 222,287 - +1.2 222,287 - -0.9 222,307 - -1.2 222,339 - -1.8 222,375 + BACOVA_03129 0.13 -0.3 222,375 + BACOVA_03129 0.13 +1.7 222,379 + BACOVA_03129 0.13 +4.3 222,380 - BACOVA_03129 0.13 +0.7 222,380 - BACOVA_03129 0.13 -1.0 222,380 - BACOVA_03129 0.13 +0.3 222,403 - BACOVA_03129 0.17 -1.1 222,441 + BACOVA_03129 0.24 -1.3 222,442 - BACOVA_03129 0.24 -1.6 222,442 - BACOVA_03129 0.24 +0.6 222,466 + BACOVA_03129 0.28 -0.4 222,487 + BACOVA_03129 0.31 +2.7 222,487 + BACOVA_03129 0.31 -1.8 222,487 + BACOVA_03129 0.31 +2.5 222,531 - BACOVA_03129 0.39 +1.7 222,531 - BACOVA_03129 0.39 +1.8 222,581 + BACOVA_03129 0.47 -0.9 222,581 + BACOVA_03129 0.47 -1.8 222,590 + BACOVA_03129 0.49 +0.9 222,648 - BACOVA_03129 0.59 -1.7 222,665 + BACOVA_03129 0.62 -1.9 222,706 - BACOVA_03129 0.69 -2.0 222,768 - BACOVA_03129 0.79 -3.1 222,786 - BACOVA_03129 0.82 +1.3 222,797 - BACOVA_03129 0.84 +1.6 222,822 - BACOVA_03129 0.88 +2.0 222,850 + +0.2 222,851 - -0.1 222,874 + +0.6 222,875 - -2.6 222,904 + +0.8 222,921 - -1.7 222,966 + +1.0 222,975 + +1.9 222,976 - -1.4 222,986 - -1.5 222,993 - -2.4 222,998 + -1.0 222,998 + -1.1 223,010 - +4.2 223,012 - +0.4 223,036 + -1.7 223,037 - +0.8 223,081 + -1.4 223,082 - +0.1 223,092 + -0.8 223,098 + +1.2 223,098 + -1.4 223,099 - +3.9 223,110 + +1.1 223,111 - -0.7 223,153 + -1.5 223,174 - +2.0 223,176 + -0.8 223,184 - +3.2 223,184 - +1.4 223,187 + -1.8 223,196 + +0.7 223,197 - +0.9 223,198 + -0.3 223,198 + +0.5 223,199 - -0.2 223,209 - -1.4
Or see this region's nucleotide sequence