Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03126

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03127 and BACOVA_03126 overlap by 134 nucleotidesBACOVA_03126 and BACOVA_03128 are separated by 80 nucleotides BACOVA_03127: BACOVA_03127 - TonB-linked outer membrane protein, SusC/RagA family, at 217,709 to 221,056 _03127 BACOVA_03126: BACOVA_03126 - hypothetical protein, at 220,923 to 221,135 _03126 BACOVA_03128: BACOVA_03128 - sigma factor regulatory protein, FecR/PupR family, at 221,216 to 222,211 _03128 Position (kb) 220 221 222Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 219.949 kb on - strand, within BACOVA_03127at 219.970 kb on + strand, within BACOVA_03127at 219.970 kb on + strand, within BACOVA_03127at 219.970 kb on + strand, within BACOVA_03127at 219.972 kb on + strand, within BACOVA_03127at 220.038 kb on + strand, within BACOVA_03127at 220.038 kb on + strand, within BACOVA_03127at 220.039 kb on - strand, within BACOVA_03127at 220.039 kb on - strand, within BACOVA_03127at 220.086 kb on - strand, within BACOVA_03127at 220.113 kb on + strand, within BACOVA_03127at 220.117 kb on + strand, within BACOVA_03127at 220.117 kb on + strand, within BACOVA_03127at 220.118 kb on - strand, within BACOVA_03127at 220.118 kb on - strand, within BACOVA_03127at 220.118 kb on - strand, within BACOVA_03127at 220.211 kb on + strand, within BACOVA_03127at 220.212 kb on - strand, within BACOVA_03127at 220.223 kb on - strand, within BACOVA_03127at 220.223 kb on - strand, within BACOVA_03127at 220.262 kb on - strand, within BACOVA_03127at 220.304 kb on + strand, within BACOVA_03127at 220.304 kb on + strand, within BACOVA_03127at 220.328 kb on + strand, within BACOVA_03127at 220.348 kb on + strand, within BACOVA_03127at 220.379 kb on + strand, within BACOVA_03127at 220.380 kb on - strand, within BACOVA_03127at 220.383 kb on - strand, within BACOVA_03127at 220.418 kb on + strand, within BACOVA_03127at 220.434 kb on - strand, within BACOVA_03127at 220.434 kb on - strand, within BACOVA_03127at 220.434 kb on - strand, within BACOVA_03127at 220.434 kb on - strand, within BACOVA_03127at 220.460 kb on - strand, within BACOVA_03127at 220.460 kb on - strand, within BACOVA_03127at 220.460 kb on - strand, within BACOVA_03127at 220.475 kb on - strand, within BACOVA_03127at 220.526 kb on + strand, within BACOVA_03127at 220.527 kb on - strand, within BACOVA_03127at 220.527 kb on - strand, within BACOVA_03127at 220.530 kb on + strand, within BACOVA_03127at 220.531 kb on - strand, within BACOVA_03127at 220.531 kb on - strand, within BACOVA_03127at 220.577 kb on - strand, within BACOVA_03127at 220.591 kb on + strand, within BACOVA_03127at 220.592 kb on - strand, within BACOVA_03127at 220.592 kb on - strand, within BACOVA_03127at 220.637 kb on + strand, within BACOVA_03127at 220.637 kb on + strand, within BACOVA_03127at 220.638 kb on - strand, within BACOVA_03127at 220.638 kb on - strand, within BACOVA_03127at 220.681 kb on + strand, within BACOVA_03127at 220.681 kb on + strand, within BACOVA_03127at 220.739 kb on + strandat 220.740 kb on - strandat 220.742 kb on + strandat 220.763 kb on - strandat 220.767 kb on - strandat 220.767 kb on - strandat 220.789 kb on + strandat 220.829 kb on - strandat 220.841 kb on + strandat 220.841 kb on + strandat 220.842 kb on - strandat 220.852 kb on - strandat 220.888 kb on + strandat 220.888 kb on + strandat 220.889 kb on - strandat 220.889 kb on - strandat 220.901 kb on + strandat 220.902 kb on - strandat 220.902 kb on - strandat 220.921 kb on + strandat 221.006 kb on - strandat 221.011 kb on + strandat 221.011 kb on + strandat 221.014 kb on + strandat 221.014 kb on + strandat 221.014 kb on + strandat 221.069 kb on - strand, within BACOVA_03126at 221.069 kb on - strand, within BACOVA_03126at 221.102 kb on + strand, within BACOVA_03126at 221.103 kb on - strand, within BACOVA_03126at 221.217 kb on + strandat 221.233 kb on + strandat 221.234 kb on - strandat 221.251 kb on + strandat 221.272 kb on - strandat 221.294 kb on + strandat 221.331 kb on + strand, within BACOVA_03128at 221.333 kb on + strand, within BACOVA_03128at 221.360 kb on + strand, within BACOVA_03128at 221.360 kb on + strand, within BACOVA_03128at 221.360 kb on + strand, within BACOVA_03128at 221.360 kb on + strand, within BACOVA_03128at 221.390 kb on + strand, within BACOVA_03128at 221.480 kb on + strand, within BACOVA_03128at 221.480 kb on + strand, within BACOVA_03128at 221.485 kb on + strand, within BACOVA_03128at 221.499 kb on + strand, within BACOVA_03128at 221.563 kb on + strand, within BACOVA_03128at 221.563 kb on + strand, within BACOVA_03128at 221.573 kb on - strand, within BACOVA_03128at 221.601 kb on - strand, within BACOVA_03128at 221.602 kb on + strand, within BACOVA_03128at 221.605 kb on + strand, within BACOVA_03128at 221.605 kb on + strand, within BACOVA_03128at 221.606 kb on - strand, within BACOVA_03128at 221.660 kb on + strand, within BACOVA_03128at 221.660 kb on + strand, within BACOVA_03128at 221.660 kb on + strand, within BACOVA_03128at 221.660 kb on + strand, within BACOVA_03128at 221.661 kb on - strand, within BACOVA_03128at 221.663 kb on - strand, within BACOVA_03128at 221.664 kb on + strand, within BACOVA_03128at 221.664 kb on + strand, within BACOVA_03128at 221.680 kb on + strand, within BACOVA_03128at 221.769 kb on + strand, within BACOVA_03128at 221.792 kb on + strand, within BACOVA_03128at 221.806 kb on + strand, within BACOVA_03128at 221.852 kb on + strand, within BACOVA_03128at 221.858 kb on + strand, within BACOVA_03128at 221.858 kb on + strand, within BACOVA_03128at 221.859 kb on - strand, within BACOVA_03128at 221.897 kb on + strand, within BACOVA_03128at 221.898 kb on - strand, within BACOVA_03128at 221.898 kb on - strand, within BACOVA_03128at 221.904 kb on + strand, within BACOVA_03128at 221.909 kb on + strand, within BACOVA_03128at 221.910 kb on - strand, within BACOVA_03128at 221.972 kb on + strand, within BACOVA_03128at 222.004 kb on + strand, within BACOVA_03128at 222.004 kb on + strand, within BACOVA_03128at 222.054 kb on + strand, within BACOVA_03128at 222.054 kb on + strand, within BACOVA_03128at 222.055 kb on - strand, within BACOVA_03128at 222.058 kb on + strand, within BACOVA_03128at 222.118 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
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219,949 - BACOVA_03127 0.67 +1.3
219,970 + BACOVA_03127 0.68 +0.6
219,970 + BACOVA_03127 0.68 -2.1
219,970 + BACOVA_03127 0.68 +0.1
219,972 + BACOVA_03127 0.68 +1.1
220,038 + BACOVA_03127 0.70 +0.3
220,038 + BACOVA_03127 0.70 -0.4
220,039 - BACOVA_03127 0.70 -1.5
220,039 - BACOVA_03127 0.70 +1.7
220,086 - BACOVA_03127 0.71 -1.2
220,113 + BACOVA_03127 0.72 -1.0
220,117 + BACOVA_03127 0.72 -1.4
220,117 + BACOVA_03127 0.72 +2.3
220,118 - BACOVA_03127 0.72 -2.2
220,118 - BACOVA_03127 0.72 -4.0
220,118 - BACOVA_03127 0.72 +1.7
220,211 + BACOVA_03127 0.75 -0.6
220,212 - BACOVA_03127 0.75 +0.6
220,223 - BACOVA_03127 0.75 +5.3
220,223 - BACOVA_03127 0.75 -1.8
220,262 - BACOVA_03127 0.76 -1.4
220,304 + BACOVA_03127 0.78 +0.3
220,304 + BACOVA_03127 0.78 +1.3
220,328 + BACOVA_03127 0.78 +2.6
220,348 + BACOVA_03127 0.79 -1.3
220,379 + BACOVA_03127 0.80 -1.9
220,380 - BACOVA_03127 0.80 +1.8
220,383 - BACOVA_03127 0.80 +1.2
220,418 + BACOVA_03127 0.81 +1.7
220,434 - BACOVA_03127 0.81 -0.1
220,434 - BACOVA_03127 0.81 -0.2
220,434 - BACOVA_03127 0.81 +1.7
220,434 - BACOVA_03127 0.81 +0.6
220,460 - BACOVA_03127 0.82 -1.9
220,460 - BACOVA_03127 0.82 -1.4
220,460 - BACOVA_03127 0.82 -0.6
220,475 - BACOVA_03127 0.83 +2.1
220,526 + BACOVA_03127 0.84 +0.7
220,527 - BACOVA_03127 0.84 -1.9
220,527 - BACOVA_03127 0.84 -0.7
220,530 + BACOVA_03127 0.84 -0.4
220,531 - BACOVA_03127 0.84 +0.2
220,531 - BACOVA_03127 0.84 -0.0
220,577 - BACOVA_03127 0.86 +2.1
220,591 + BACOVA_03127 0.86 -1.9
220,592 - BACOVA_03127 0.86 +1.3
220,592 - BACOVA_03127 0.86 -0.8
220,637 + BACOVA_03127 0.87 -0.4
220,637 + BACOVA_03127 0.87 +0.6
220,638 - BACOVA_03127 0.87 +0.3
220,638 - BACOVA_03127 0.87 +0.7
220,681 + BACOVA_03127 0.89 -3.0
220,681 + BACOVA_03127 0.89 -0.2
220,739 + +4.3
220,740 - -1.2
220,742 + -1.4
220,763 - -2.0
220,767 - -0.6
220,767 - +1.3
220,789 + +2.0
220,829 - +0.2
220,841 + -3.9
220,841 + +1.6
220,842 - +0.7
220,852 - +0.7
220,888 + +3.4
220,888 + +3.2
220,889 - +0.2
220,889 - +2.2
220,901 + -1.6
220,902 - -0.8
220,902 - -0.9
220,921 + +0.1
221,006 - -0.8
221,011 + -1.6
221,011 + +0.8
221,014 + -0.5
221,014 + +1.2
221,014 + -2.9
221,069 - BACOVA_03126 0.69 -2.2
221,069 - BACOVA_03126 0.69 +2.7
221,102 + BACOVA_03126 0.84 -0.2
221,103 - BACOVA_03126 0.85 +0.1
221,217 + -0.8
221,233 + +2.2
221,234 - -0.7
221,251 + -2.1
221,272 - -0.1
221,294 + -0.1
221,331 + BACOVA_03128 0.12 +0.6
221,333 + BACOVA_03128 0.12 +0.1
221,360 + BACOVA_03128 0.14 -1.2
221,360 + BACOVA_03128 0.14 +1.0
221,360 + BACOVA_03128 0.14 -0.4
221,360 + BACOVA_03128 0.14 -1.2
221,390 + BACOVA_03128 0.17 +2.0
221,480 + BACOVA_03128 0.27 +2.2
221,480 + BACOVA_03128 0.27 -0.0
221,485 + BACOVA_03128 0.27 +3.4
221,499 + BACOVA_03128 0.28 +2.4
221,563 + BACOVA_03128 0.35 +3.6
221,563 + BACOVA_03128 0.35 -1.3
221,573 - BACOVA_03128 0.36 +0.1
221,601 - BACOVA_03128 0.39 +0.6
221,602 + BACOVA_03128 0.39 -0.8
221,605 + BACOVA_03128 0.39 -1.1
221,605 + BACOVA_03128 0.39 +1.9
221,606 - BACOVA_03128 0.39 +0.1
221,660 + BACOVA_03128 0.45 +0.6
221,660 + BACOVA_03128 0.45 -1.1
221,660 + BACOVA_03128 0.45 -0.4
221,660 + BACOVA_03128 0.45 -0.8
221,661 - BACOVA_03128 0.45 -1.0
221,663 - BACOVA_03128 0.45 +0.1
221,664 + BACOVA_03128 0.45 +2.5
221,664 + BACOVA_03128 0.45 -0.5
221,680 + BACOVA_03128 0.47 -0.4
221,769 + BACOVA_03128 0.56 +0.9
221,792 + BACOVA_03128 0.58 -0.9
221,806 + BACOVA_03128 0.59 -0.7
221,852 + BACOVA_03128 0.64 +5.2
221,858 + BACOVA_03128 0.64 -1.2
221,858 + BACOVA_03128 0.64 -1.6
221,859 - BACOVA_03128 0.65 +0.6
221,897 + BACOVA_03128 0.68 +3.4
221,898 - BACOVA_03128 0.68 -0.9
221,898 - BACOVA_03128 0.68 -0.6
221,904 + BACOVA_03128 0.69 -1.3
221,909 + BACOVA_03128 0.70 -1.7
221,910 - BACOVA_03128 0.70 +1.2
221,972 + BACOVA_03128 0.76 +0.2
222,004 + BACOVA_03128 0.79 -0.9
222,004 + BACOVA_03128 0.79 -1.0
222,054 + BACOVA_03128 0.84 -1.1
222,054 + BACOVA_03128 0.84 -0.3
222,055 - BACOVA_03128 0.84 -0.1
222,058 + BACOVA_03128 0.85 +0.9
222,118 + +0.6

Or see this region's nucleotide sequence